Data from: Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata

Suvorov A, Jensen NO, Sharkey CR, Fujimoto MS, Bodily P, Wightman HMC, Ogden TH, Clement MJ, Bybee SM

Date Published: October 17, 2016

DOI: http://dx.doi.org/10.5061/dryad.pb5vv

 

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Title Opsin Alignment1
Downloaded 6 times
Description Multiple sequence COBALT alignment putative Odonata and Ephemeroptera opsin protein sequences including homologous opsin sequences from mollusks (outgroup).
Download Alignment1.fasta (368.7 Kb)
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Title Opsin Alignment2
Downloaded 4 times
Description Multiple sequence COBALT alignment of putative Odonata and Ephemeroptera opsin protein sequences including homologous opsin sequences from mollusks (outgroup). All partial opsin sequences (< 1056 bp and < 7 transmembrane domains) were excluded.
Download Alignment2.fasta (268.2 Kb)
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Title Opsin Alignment3
Downloaded 5 times
Description Multiple sequence COBALT alignment of putative Odonata and Ephemeroptera opsin protein sequences including homologous opsin sequences from mollusks (outgroup) combined with opsins identified in (Futahashi et al. 2015).
Download Alignment3.fasta (654.7 Kb)
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Title Bayesian "diffusion" model
Downloaded 7 times
Description Naive Bayesian model of selection "diffusion" written in R programming language.
Download Bayesian_diffusion_model.r (3.844 Kb)
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Title Transcriptome Trinity assemblies
Downloaded 5 times
Description Transcriptome Trinity assemblies. NCBI accession numbers of raw RNA-seq libraries that were used to assemble transcriptomes: SRR2164542 SRR2164543 SRR2164551 SRR2164552 SRR2157378 SRR2157379 SRR2157380 SRR2157381 SRR2157382 SRR2157383 SRR2164544 SRR2164545 SRR2157367 SRR2164546 SRR2164547 SRR2164548 SRR2157371 SRR2157372 SRR2164549 SRR2164550
Download transcriptomes.tgz (149.7 Mb)
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When using this data, please cite the original publication:

Suvorov A, Jensen NO, Sharkey CR, Fujimoto MS, Bodily P, Wightman HMC, Ogden TH, Clement MJ, Bybee SM (2017) Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata. Molecular Ecology 26(5): 1306-1322. http://dx.doi.org/10.1111/mec.13884

Additionally, please cite the Dryad data package:

Suvorov A, Jensen NO, Sharkey CR, Fujimoto MS, Bodily P, Wightman HMC, Ogden TH, Clement MJ, Bybee SM (2016) Data from: Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pb5vv
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