Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference

Tan G, Muffato M, Ledergerber C, Herrero J, Goldman N, Gil M, Dessimoz C

Date Published: May 27, 2015

DOI: http://dx.doi.org/10.5061/dryad.pc5j0

 

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Title Supplementary materials (including SFig 1-33, STable 1)
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Description Accepted topologies and lists of species for species-tree discordance test, lists of species for minimum duplication test, supplementary table 1, and supplementary figures 1 to 33.
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Title Raw data of enriched species discordance, minimum duplication test, and simulation study
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Description Alignment and trees associated with enriched species-tree discordance test, minimum duplication test, and simulation study.
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Title Raw data of Ensembl Compara analyses
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Description Alignment and trees associated with Ensembl compara data and pipeline.
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Title Genome list
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Description List of genomes used in the study, including source and release number.
Download filtering_species.txt (56.80 Kb)
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When using this data, please cite the original publication:

Tan G, Muffato M, Ledergerber C, Herrero J, Goldman N, Gil M, Dessimoz C (2015) Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference. Systematic Biology 64(5): 778-791. http://dx.doi.org/10.1093/sysbio/syv033

Additionally, please cite the Dryad data package:

Tan G, Muffato M, Ledergerber C, Herrero J, Goldman N, Gil M, Dessimoz C (2015) Data from: Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pc5j0
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