Data from: A metagenetics approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual

Eves-van den Akker S, Lilley C, Reid A, Pickup J, Anderson E, Cock P, Blaxter M, Urwin P, Jones J, Blok V

Date Published: October 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.pd7r6

 

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Title top_50_most_common_refine
Downloaded 9 times
Description 50 most common amplicons aligned and refined.
Download top_50_most_common_refine.fa (15.62 Kb)
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Title top_50_midrr
Downloaded 3 times
Description Mid point re-routed bayesian phylogeny of top 50 most common amplicons with 2 million iterations
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Title Consensus_types_align
Downloaded 4 times
Description Consensus of each mito type alignment
Download Consensus_types_align.fa (1.559 Kb)
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Title Consensus_types_with_4_align
Downloaded 4 times
Description consensus of each mito type alignment with addition of "type 4"
Download Consensus_types_with_4_align.fa (1.146 Kb)
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Title Barcode_and_type
Downloaded 3 times
Description tab separated table of location and relative type percentage with barcodes.
Download Barcode_and_type.tsv (30.20 Kb)
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Title CYTB_sequences_used_to_identify_groups
Downloaded 4 times
Description CYTB_sequences_used_to_identify_groups
Download CYTB_sequences_used_to_identify_groups.fasta (20.16 Kb)
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When using this data, please cite the original publication:

Eves-van den Akker S, Lilley C, Reid A, Pickup J, Anderson E, Cock P, Blaxter M, Urwin P, Jones J, Blok V (2015) A metagenetics approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual. Molecular Ecology, 24(23): 5842–5851. http://dx.doi.org/10.1111/mec.13434

Additionally, please cite the Dryad data package:

Eves-van den Akker S, Lilley C, Reid A, Pickup J, Anderson E, Cock P, Blaxter M, Urwin P, Jones J, Blok V (2015) Data from: A metagenetics approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pd7r6
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