Data from: Genomic architecture of habitat-related divergence and signature of directional selection in the body shapes of Gnathopogon fishes

Kakioka R, Kokita T, Kumada H, Watanabe K, Okuda N

Date Published: July 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.pj620

 

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Title Centroid sizes of the mapping family
Downloaded 10 times
Description Centroid sizes of the samples from the mapping family and the populations of the founder's origin in NTS format. The numbers and the population codes (see supplementary Table S1) of the analysed populations are: 1 granddam, 8 E2H, 1 grandsire, 12 CN, 40 F1, and 195 F2, in this order.
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Title Shape variables of the mapping family
Downloaded 9 times
Description Partial warps and uniform components of the samples from the mapping family and the populations of the founder's origin in NTS format. The numbers and the population codes (see supplementary Table S1) of the analysed populations are: 1 granddam, 8 E2H, 1 grandsire, 12 CN, 40 F1, and 195 F2, in this order.
Download Gnathopogon_GM_mapping_family_shape_variables.nts (117.5 Kb)
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Title Centroid sizes of the samples from natural populations
Downloaded 6 times
Description Centroid sizes of the samples from the natural populations in NTS format. The numbers and the population codes (see supplementary Table S1) of the analysed populations are: 11 E1T, 20 E1S, 34 E1D, 32 E1M, 8 E2H, 18 E2R, 10 E2K, 6 E2I, 14 E3K, 10 E3I, 3 S, 28 CM, and 12 CN, in this order.
Download Gnathopogon_GM_natural_populations_centro...es.nts (5.477 Kb)
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Title Shape variables of the samples from the natural populations
Downloaded 11 times
Description Partial warps and uniform components of the samples from the natural populations in NTS format. The numbers and the population codes (see supplementary Table S1) of the analysed populations are: 11 E1T, 20 E1S, 34 E1D, 32 E1M, 8 E2H, 18 E2R, 10 E2K, 6 E2I, 14 E3K, 10 E3I, 3 S, 28 CM, and 12 CN, in this order.
Download Gnathopogon_GM_natural_populations_shape_...es.nts (94.15 Kb)
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Title Input file for QTL analysis
Downloaded 12 times
Description Phenotypic and genotypic data of the F2 offsprings for QTL analysis in R/qtl format. Missing values are coded as "-".
Download Gnathopogon_rqtl.txt (735.9 Kb)
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Title Vertebral numbers
Downloaded 7 times
Description Vertebral numbers and standard lengths of the samples from the natural populations and the mapping family. Individual IDs, names and the codes (see supplementary Table S1) of the populations are also included. Missing values are coded as "-".
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When using this data, please cite the original publication:

Kakioka R, Kokita T, Kumada H, Watanabe K, Okuda N (2015) Genomic architecture of habitat-related divergence and signature of directional selection in the body shapes of Gnathopogon fishes. Molecular Ecology 24(16): 4159–4174. http://dx.doi.org/10.1111/mec.13309

Additionally, please cite the Dryad data package:

Kakioka R, Kokita T, Kumada H, Watanabe K, Okuda N (2015) Data from: Genomic architecture of habitat-related divergence and signature of directional selection in the body shapes of Gnathopogon fishes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pj620
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