Data from: Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson K, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR

Date Published: March 31, 2015

DOI: http://dx.doi.org/10.5061/dryad.pk056

 

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Title README
Description Contains description of every file submitted for this data entry.
Download README.txt (3.529 Kb)
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Title Otu_Table
Description ontains 16SrRNA raw abundances for each gorilla group clustered at 97% sequence similarity
Download Otu_Table.txt (1.103 Mb)
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Title Otu_taxonomy
Description Contains taxonomic information and 16S rRNA sequence similarity % for every Otu in Otu_table.
Download Otu_taxonomy.txt (1.671 Mb)
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Title Genus_Table
Description Contains 16SrRNA raw abundances for each gorilla group at genus level
Download Genus_Table.txt (46.15 Kb)
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Title Genus_taxonomy
Description Contains taxonomic information and 16S rRNA sequence similarity % for every genus in Genus_table.
Download Genus_taxonomy.txt (75.88 Kb)
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Title Phyla_Table
Description Contains 16SrRNA raw abundances for each gorilla group at phyla level
Download Phyla_Table.txt (2.753 Kb)
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Title Phyla_taxonomy
Description Contains taxonomic information and 16S rRNA sequence similarity % for every phylum in Phyla_table.
Download Phyla_taxonomy.txt (3.285 Kb)
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Title SCFA
Download SCFA.txt (1.937 Kb)
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Title Metabolomics_data
Description Contains metabolite concentrations (GC-MS spectra expressed as analyte concentration relative to hentriacontanoic acid per gram Dry Weight (relative concentration), i.e., as target compound peak area divided by the internal standard (IS) peak area (IS concentration is the same in all samples)
Download Metabolomics_data .txt (36.24 Kb)
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Title Feeding
Description Contains the number of observation days feeding on different food types consumed by all members of H1 and H2 (habituated gorilla groups) during 61 observation days. THV=Terrestrial herbaceous vegetation, FR=Fruit, LV=Leaves, INS=Insects (termites), BK=Bark.
Download Feeding.txt (1.918 Kb)
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Title My454
Description Perl script used to process raw 16S rRNA amplicons (primer trimming and removal of low quality sequences according to specified criteria, see detailed description in file)
Download my454 (16.91 Kb)
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When using this data, please cite the original publication:

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson K, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR (2015) Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology. Molecular Ecology 24(10): 2551-2565. http://dx.doi.org/10.1111/mec.13181

Additionally, please cite the Dryad data package:

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson K, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR (2015) Data from: Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pk056
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