Functional diversity loss among pollinators has rapidly progressed across the globe and is expected to influence plant–pollinator interactions in natural communities. Although recent findings suggest that the disappearance of a certain pollinator functional group may cause niche expansions and/or shifts in other groups, no study has examined this prediction in natural communities with high plant and pollinator diversities. By comparing coastal pollination networks on continental and oceanic islands, we examined how community-level flower visit patterns are influenced by the relative biomass of long-tongued pollinators (RBLP). We found that RBLP significantly correlated with pollinator functional diversity and was lower in oceanic than in continental islands. Pollinator niches shifted with decreasing RBLP, such that diverse species with various proboscis lengths, especially short-tongued species, increasingly visited long-tubed flowers. However, we found no conspicuous negative impacts of low RBLP and the consequent niche shifts on pollinator visit frequencies to flowers in oceanic island communities. Notably, fruit set significantly decreased as RBLP decreased in a study plant species. These results suggest that niche shifts by other functional groups can generally compensate for a decline in long-tongued pollinators in natural communities, but there may be negative impacts on plant reproduction.