Data from: Recurrent evolution of melanism in South American felids

Schneider A, Henegar C, Day K, Absher D, Napolitano C, Silveira L, David VA, O’Brien SJ, Menotti-Raymond M, Barsh GS, Eizirik E

Date Published: February 24, 2015

DOI: http://dx.doi.org/10.5061/dryad.pq482

 

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Title Genomic sequence data
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Description The sequence data file is provided as a ZIP archive containing 3 subfolders, one for each of the three analyzed species (i.e. Lco - Leopardus colocolo; Lge - Leopardus geoffroyi ; Lgu - Leopardus guigna). For each of these species the following sequence files are provided in the fasta format: - unmasked genomic consensus sequence computed for each and all the Asip and Mc1r loci fragments (i.e. for Leopardus colocolo the unmasked consensus sequence file is labeled Lco.fa); - genomic consensus sequence computed for each and all of the Asip and Mc1r loci fragments and masked for repeats and low complexity sequence using RepeatMasker (i.e. for Leopardus colocolo the masked consensus sequence file is labeled Lco_rm.fa); - haplotype sequence data for each of the genomic fragments and each of the analyzed samples, one file per fragment (i.e. Lco_AsipA for AsipA fragment) containing two haplotypic sequences per sample. These sequences are labeled by indicating the genomic fragment, the species, the individual and finally the haplotype (i.e. AsipA_Lco-030_h1 [organism=Leopardus colocolo] ASIP locus segment A). The samples are labeled using the same identifiers as those provided in the manuscript (see Table S1 for details).
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When using this data, please cite the original publication:

Schneider A, Henegar C, Day K, Absher D, Napolitano C, Silveira L, David VA, O’Brien SJ, Menotti-Raymond M, Barsh GS, Eizirik E (2015) Recurrent evolution of melanism in South American felids. PLOS Genetics 11(2): e1004892. http://dx.doi.org/10.1371/journal.pgen.1004892

Additionally, please cite the Dryad data package:

Schneider A, Henegar C, Day K, Absher D, Napolitano C, Silveira L, David VA, O’Brien SJ, Menotti-Raymond M, Barsh GS, Eizirik E (2015) Data from: Recurrent evolution of melanism in South American felids. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pq482
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