Data from: Taxonomy and phylogeny can yield comparable results in comparative palaeontological analyses

Soul LC, Friedman M

Date Published: March 27, 2015

DOI: http://dx.doi.org/10.5061/dryad.pt3qm

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Data
Downloaded 13 times
Description All cladograms, taxonomies and range data used in analyses.
Download Data.zip (191.5 Kb)
Details View File Details
Title Online appendix 1
Downloaded 23 times
Description Sources and details of all data sets used in analyses
Download Online appendix 1.xlsx (19.03 Kb)
Details View File Details
Title Online Appendix 2
Downloaded 26 times
Description Methods flow chart
Download Online Appendix 2.pdf (91.39 Kb)
Details View File Details
Title Script
Downloaded 12 times
Description Script of R code used to run all the analyses
Download Script (23.78 Kb)
Details View File Details
Title ExampleTaxonomy
Downloaded 19 times
Description An example taxonomy in the correct format to be converted to a cladogram in R using the function provided in the file tax2tree.txt
Download ExampleTaxonomy.txt (321.2 Kb)
Details View File Details
Title tax2tree
Downloaded 13 times
Description R script of function to convert a taxonomy in the format shown in the file ExampleTaxonomy.txt, to a cladogram in Newick format
Download tax2tree.txt (4.42 Kb)
Details View File Details
Title Online appendix 3
Downloaded 32 times
Description Methods and results from analyses of phylogenetic clustering of extinction
Download Online appendix 3.pdf (72.85 Kb)
Details View File Details
Title Additional Figures
Downloaded 21 times
Description Additional figures as mentioned in manuscript. Includes p-values for phylogenetic signal analysis, results of extended range analyses and results of OU model analysis with alpha proportional to tree height
Download Additional Figures.pdf (704.3 Kb)
Details View File Details
Title Results
Downloaded 41 times
Download Results.xlsx (2.193 Mb)
Details View File Details

When using this data, please cite the original publication:

Soul LC, Friedman M (2015) Taxonomy and phylogeny can yield comparable results in comparative palaeontological analyses. Systematic Biology 64(4): 608-620. http://dx.doi.org/10.1093/sysbio/syv015

Additionally, please cite the Dryad data package:

Soul LC, Friedman M (2015) Data from: Taxonomy and phylogeny can yield comparable results in comparative palaeontological analyses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.pt3qm
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: