Data from: Exploring tree-like and non-tree-like patterns using genome sequences: an example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh.

Stenz N, Larget B, Baum DA, Ané C

Date Published: June 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.q044d

 

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Title Stratified Subsample Concordance Factors
Downloaded 9 times
Description Concordance factors as well as their 95% confidence intervals for all 27,405 possible 4-taxon sets of the stratified subsample. Note: if a 4-taxon set had a concordance factor greater than 0.95, the concordance factors of the minor resolutions were approximated to evenly divide the remaining proportion (i.e. (1 - majorCF) / 2). Since these values are approximate, the upper and lower 95% confidence intervals for these splits are listed as "NA". In newer versions of the pipeline, this issue is avoided by having BUCKy output all concordance factors regardless of how small they are.
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Title PD Subsample Concordance Factors
Downloaded 2 times
Description Concordance factors as well as their 95% confidence intervals for all 27,405 possible 4-taxon sets of the PD subsample.
Download PD-subsample-CFs.csv (2.115 Mb)
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Title A. thaliana 4th Chromosome MDL Blocks
Downloaded 5 times
Description Gzipped archive containing the alignments of the 3,595 recombinational blocks as determined by MDL.
Download chr4-mdl-blocks.tar.gz (199.1 Mb)
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Title TICR
Description Github repository storing TICR scripts used in this paper.
Download //www.github.com/nstenz/ticr (0 bytes)
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When using this data, please cite the original publication:

Stenz N, Larget B, Baum DA, Ané C (2015) Exploring tree-like and non-tree-like patterns using genome sequences: an example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Systematic Biology 64(5): 809-823. http://dx.doi.org/10.1093/sysbio/syv039

Additionally, please cite the Dryad data package:

Stenz N, Larget B, Baum DA, Ané C (2015) Data from: Exploring tree-like and non-tree-like patterns using genome sequences: an example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q044d
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