Data from: Population genetic structure of Bombus terrestris in Europe: isolation and genetic differentiation of Irish and British populations

Moreira AS, Horgan FG, Murray TE, Kakouli-Duarte T

Date Published: May 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.q06c4

 

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Title Table S1
Description Microsatellite loci in Bombus terrestris typed in multiplex reactions in this study. Table contains list of primers for respective loci as well as information on the labelling dye used.
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Title Table S2
Description Table S2– Microsatellite allele frequencies in populations of Bombus terrestris from 22 European sites and two commercial populations. Population codes are represented in the first row and number of individuals genotyped for each microsatellite locus are presented in parentheses. Observed (Ho) and expected (He) heterozygosities and allelic richness are presented for each locus and population. The column on the left represents the allele sizes.
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Title Table S3
Downloaded 1 time
Description Table S3 – Genetic differentiation between European and commercial populations of Bombus terrestris. Pairwise Fst is presented above the diagonal with corresponding Euclidean geographical distances (km) between sites presented below the diagonal
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Title Table S4
Description Table S4 – STRUCTURE assignments of population probability to membership of K = 3 clusters and K = 7 clusters.
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Title Table S5
Description Table S5 – Correlations between genetic and geographic distance, as measured by Rousset’s distance (Fst/1-Fst) and the natural logarithm of geographical separation for Bombus terrestris
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Title Table S6
Description Table S6 – Migration rates among B. terrestris populations estimated using BAYESASS. Values shown are the means of the posterior distributions of m, the migration rate into each population, and their respective 95% CI in parenthesis. Values along the diagonal (in bold) are the proportion of individuals derived from the source population each generation. The expected mean and CI of non-migrants is 0.833 (0.675, 0.992), the expected mean and CI for migration is 0.013 (1.31x10-15, 0.104).
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Title Figure S1
Description Figure S1 – Fifty-percent rule consensus tree showing relationships among Bombus terrestris based on maximum likelihood analysis and Bayesian inference analysis of a 633bp segment of the mitochondrial COI gene. The tree was rooted with Bombus ignitus and Apis mellifera. Numbers above the branch are clade credibility for maximum likelihood and for Bayesian analysis below the branch.
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Title Figure S2
Downloaded 1 time
Description Figure S2– A) Estimated likelihood of the posterior probability, LnP(X|K), for values of K (the number of genetic clusters) ranging from 1 to 12 as calculated using STRUCTURE. The mean LnP(X| K) for each K over 20 permutations is represented by solid squares. Bars correspond to standard deviations over 20 permutations. B) modal value quantity of ∆K based on the second order rate change is calculated according to Evanno et al (2005).
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Title Figure S3
Description Figure S3 – Proportional membership of 24 European Bombus terrestris populations to K=7 genetic clusters. Individuals are represented by a single vertical column divided into 7 (=K) colors. The relative lengths of the colored segments correspond to the individual’s estimated proportion of membership in that cluster.
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Title Code used for Bayesian analysis
Description Code used for Bayesian analysis
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Title Code used for maximum likelihood analysis
Description Code used for maximum likelihood analysis
Download Code used for maximum likelihood analysis.pdf (93.46 Kb)
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Title Table 1
Description Abundance of bumblebee species (Bombus s.str) in assemblages sampled throughout Europe. Species were separated according to the RFLP-based method of Murray et al. (2008).
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Title COI aligned sequences for all individuals
Description COI aligned sequences for all individuals
Download COI aligned sequences for all individuals.txt (80.11 Kb)
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Title Table 2 - GPS locations of all sampled populations
Description GPS locations of all sampled populations
Download Table 2 - GPS locations of all sampled pop....docx (15.14 Kb)
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Title Table 3 - Full genotyped dataset of all populations of Bombus terrestris.
Description Full genotyped dataset of all populations of Bombus terrestris.
Download Table 3 - Full genotyped dataset of all p...s..doc (1.160 Mb)
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Title Abundance of bumblebee species (Bombus s.str) in assemblages sampled throughout Europe.
Description Abundance of bumblebee species (Bombus s.str) in assemblages sampled throughout Europe. Species were separated according to the RFLP-based method of Murray et al. (2008).
Download Table 1 - Abundance of bumblebee species ...e..doc (45.56 Kb)
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Title COI aligned sequences for all individuals_PAUP
Description COI aligned sequences for all individuals. PAUP input file.
Download COI aligned sequences for all individuals_PAUP.txt (80.62 Kb)
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Title COI aligned sequences for all individuals_MrBayes
Description COI aligned sequences for all individuals. MrBayes input file.
Download COI aligned sequences for all individuals...es.txt (80.48 Kb)
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Title MrBayes Tree File
Description MrBayes output file.
Download MrBayes Tree File.txt (13.47 Mb)
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Title Paup Tree File
Description Paup output file.
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When using this data, please cite the original publication:

Moreira AS, Horgan FG, Murray TE, Kakouli-Duarte T (2015) Population genetic structure of Bombus terrestris in Europe: isolation and genetic differentiation of Irish and British populations. Molecular Ecology 24(13): 3257-3268. http://dx.doi.org/10.1111/mec.13235

Additionally, please cite the Dryad data package:

Moreira AS, Horgan FG, Murray TE, Kakouli-Duarte T (2015) Data from: Population genetic structure of Bombus terrestris in Europe: isolation and genetic differentiation of Irish and British populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q06c4
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