Data from: Ranking and characterization of established BMI and lipid associated loci as candidates for gene-environment interactions

Shungin D, Deng WQ, Varga TV, Luan J, Mihailov E, Metspalu A, Morris AP, Forouhi NG, Lindgren C, Magnusson PKE, Pedersen NL, Hallmans G, Chu AY, Justice AE, Graff M, Winkler TW, Rose LM, Langenberg C, Cupples LA, Ridker PM, Wareham NJ, Ong KK, Loos RJF, Chasman DI, Ingelsson E, Kilpeläinen TO, Scott RA, Mägi R, Paré G, Franks PW

Date Published: August 30, 2017

DOI: https://doi.org/10.5061/dryad.q1m7t

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Title Levenes test P values
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Description The zip file contains 10 plain txt files - each of the 10 files have 2 columns, rsID SNP identifier and P values obtained from Levene's test for trait variance heterogeneity between genotypes. The files cover 5 cardiometabolic traits (body mass index, high density lipoprotein cholesterol, low density lipoprotein cholesterol, triglycerides, total cholesterol), 2 files for each trait. One contains a pruned subset of SNPs and the other one all SNPs as described in the main text of the publication.
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When using this data, please cite the original publication:

Shungin D, Deng WQ, Varga TV, Luan J, Mihailov E, Metspalu A, Morris AP, Forouhi NG, Lindgren C, Magnusson PKE, Pedersen NL, Hallmans G, Chu AY, Justice AE, Graff M, Winkler TW, Rose LM, Langenberg C, Cupples LA, Ridker PM, Wareham NJ, Ong KK, Loos RJF, Chasman DI, Ingelsson E, Kilpeläinen TO, Scott RA, Mägi R, Paré G, Franks PW (2017) Ranking and characterization of established BMI and lipid associated loci as candidates for gene-environment interactions. PLOS Genetics 13(6): e1006812. https://doi.org/10.1371/journal.pgen.1006812

Additionally, please cite the Dryad data package:

Shungin D, Deng WQ, Varga TV, Luan J, Mihailov E, Metspalu A, Morris AP, Forouhi NG, Lindgren C, Magnusson PKE, Pedersen NL, Hallmans G, Chu AY, Justice AE, Graff M, Winkler TW, Rose LM, Langenberg C, Cupples LA, Ridker PM, Wareham NJ, Ong KK, Loos RJF, Chasman DI, Ingelsson E, Kilpeläinen TO, Scott RA, Mägi R, Paré G, Franks PW (2017) Data from: Ranking and characterization of established BMI and lipid associated loci as candidates for gene-environment interactions. Dryad Digital Repository. https://doi.org/10.5061/dryad.q1m7t
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