Data from: The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

Janowitz Koch I, Creek MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM

Date Published: November 16, 2015

DOI: http://dx.doi.org/10.5061/dryad.q2g6h

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title GO gene lists_Neutrality
Downloaded 14 times
Description The gene IDs that were used for the GO analyses for the Neutrality results.
Download GO gene lists_Neutrality.xlsx (9.711 Kb)
Details View File Details
Title EWAsher_GO
Downloaded 12 times
Description A list of our genes used for GO analyses (from the list of 68 outliers) with the background list that we used in the second tab.
Download EWAsher_GO.xlsx (95.86 Kb)
Details View File Details
Title Epigenotype_Files
Downloaded 17 times
Description Epigenotype variant files used for ADMIXTURE, dendrograms, and PCA
Download Epigenotype_File.xlsx (8.001 Mb)
Details View File Details
Title BS-Seeker_Log_Files
Downloaded 13 times
Description BS-Seeker results log files for dog and wolf samples
Download BS-Seeker_Log_Files.txt (86.60 Kb)
Details View File Details
Title Shared_Methylation_Sites
Downloaded 27 times
Description File containing the methylation frequency for each individual at all shares sites (24,205)
Download Shared_Methylation_Sites.txt (10.59 Mb)
Details View File Details

When using this data, please cite the original publication:

Janowitz Koch I, Creek MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM (2016) The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves. Molecular Ecology 25(8): 1838–1855. http://dx.doi.org/10.1111/mec.13480

Additionally, please cite the Dryad data package:

Janowitz Koch I, Creek MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM (2015) Data from: The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q2g6h
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: