Data from: Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae

Lemieux C, Otis C, Turmel M

Date Published: October 14, 2014

DOI: http://dx.doi.org/10.5061/dryad.q4432

 

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Title Amino acid dataset
Description This is the amino acid dataset used to infer the phylogeny presented in Figure 1. It contains 15,549 positions and was assembled from 79 proteins encoded in the chloroplast genomes of 63 green algae. The data set is in Phylip format.
Download Amino_acid_dataset.phy (1.312 Mb)
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Title Degen1_nucleotide_dataset
Description This is the Degen1 nucleotide dataset used to infer the phylogeny presented in Figure 4. It contains 46,404 positions and was assembled from 79 chloroplast genes of 63 green algae. The data set is in Phylip format and comprises all three codon positions that were degenerated using the Degen1.pl script of Regier et al. (Nature 2010 463:1079-1083).
Download Degen1_nucleotide_dataset.phy (3.919 Mb)
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Title Codon_positions_1+2_dataset
Description This is the nt1+2 nucleotide dataset used to infer the phylogeny presented in Figure 4. It contains 30,936 positions and was assembled from 79 chloroplast genes of 63 green algae. The data set is in Phylip format and comprises only the first two positions of the codons.
Download Codon_positions_1+2_dataset.phy (2.612 Mb)
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When using this data, please cite the original publication:

Lemieux C, Otis C, Turmel M (2014) Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evolutionary Biology 14: 211. http://dx.doi.org/10.1186/s12862-014-0211-2

Additionally, please cite the Dryad data package:

Lemieux C, Otis C, Turmel M (2014) Data from: Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q4432
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