Data from: A genetic legacy of introgression confounds phylogeny and biogeography in oaks

McVay JD, Hipp AL, Manos PS

Date Published: April 13, 2017

DOI: http://dx.doi.org/10.5061/dryad.q5tm5

 

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Title Complete RAD dataset in phylip format (zipped).
Downloaded 2 times
Description Complete concatenated phylogenetic dataset ( min. 4 individuals per locus) in phylip format. Clustered via PyRAD at 90% similarity within and among samples.
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Title Zipped ".loci" file.
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Description Locus-delimited dataset (".loci) output from PyRAD for entire RAD dataset.
Download c90d6m4p3.loci.gz (21.06 Mb)
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Title ncsc90d6m4p3.nex
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Description Complete RAD dataset (min. 4 individuals per locus) in interleaved nexus format.
Download ncsc90d6m4p3.nex.gz (47.76 Mb)
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Title Taxa partition
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Description Taxa partition in nexus format for use in SVDq analysis implemented in PAUP 4a150. To be used in conjunction with RAD dataset in nexus format.
Download svdtax.txt (2.396 Kb)
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When using this data, please cite the original publication:

McVay JD, Hipp AL, Manos PS (2017) A genetic legacy of introgression confounds phylogeny and biogeography in oaks. Proceedings of the Royal Society B 284(1854): 20170300. http://dx.doi.org/10.1098/rspb.2017.0300

Additionally, please cite the Dryad data package:

McVay JD, Hipp AL, Manos PS (2017) Data from: A genetic legacy of introgression confounds phylogeny and biogeography in oaks. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q5tm5
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