Data from: Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host

Pérez-Escobar OA, Balbuena JA, Gottschling M

Date Published: October 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.q6s1f

 

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Title Concatenated alignment of nuclear and chloroplast loci of Catasetinae
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Download Catasetinae_NR_CP_Syst_Biol_submit_v7_NX.nex (398.2 Kb)
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Title Consensus chloroplast tree of Satyrium
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Description Consensus tree derived from Bayesian inference
Download Satyrium_infile.nex.con_cp.tre (19.10 Kb)
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Title Consensus nuclear tree of Satyrium
Downloaded 5 times
Description Consensus tree derived from Bayesian inference
Download Satyrium_infile.nex.con_n.tre (21.43 Kb)
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Title Set of chloroplast posterior probability trees of Satyrium
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Description 20000 posterior probability trees of Satyrium derived from Bayesian inference and chloroplast data
Download Satyrium_infile.nex.run1_cp.t (40.15 Mb)
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Title Set of nuclear posterior probability trees of Satyrium
Downloaded 9 times
Description 20000 posterior probability trees of Satyrium derived from Bayesian inference and nuclear data
Download Satyrium_infile.nex.run1_n.t (40.15 Mb)
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Title PACo-ParaFit script for outlier detection in phylogenies
Downloaded 29 times
Description Detailed R script for outlier detection in phylogenies using PACo and ParaFit
Download Rumbling_orchids_Script_03_vsubmit_SystBiol_SB.R (13.12 Kb)
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When using this data, please cite the original publication:

Pérez-Escobar OA, Balbuena JA, Gottschling M (2016) Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host. Systematic Biology 65 (1): 51-65. http://dx.doi.org/10.1093/sysbio/syv070

Additionally, please cite the Dryad data package:

Pérez-Escobar OA, Balbuena JA, Gottschling M (2015) Data from: Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q6s1f
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