Data from: Molecular Inversion Probes for targeted resequencing in non-model organisms

Niedzicka M, Fijarczyk A, Dudek K, Stuglik M, Babik W

Date Published: April 26, 2016

DOI: http://dx.doi.org/10.5061/dryad.q72b7

 

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Title Reference sequences
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Description Reference sequences in fasta format
Download ref_for_248_mips.fasta (43.02 Kb)
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Title Details of MIP design
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Description This Excel file contains the sequences of MIP probes as well as information about the position of MIPs on contigs from the Lissotriton reference transcriptome available at http://newtbase.eko.uj.edu.pl/
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Title scripts_for_MIP_design.tar
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Description Gzipped tar archive containing scripts used for MIP design. These scripts were developed by O'Roak et al. (2012) and slightly modified to fit our needs. Please note that there these scripts have been supplanted by the MIPGEN software available et https://github.com/shendurelab/MIPGEN
Download scripts_for_MIP_design.tar.gz (3.763 Mb)
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Title vcf_1st_experiment.tar
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Description Gzipped tar archive containing vcf files for samples from the 1st experiment described in the paper.
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Title vcf_2nd_experiment.tar
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Description Gzipped tar archive containing vcf files for samples from the 2nd experiment described in the paper.
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When using this data, please cite the original publication:

Niedzicka M, Fijarczyk A, Dudek K, Stuglik M, Babik W (2016) Molecular Inversion Probes for targeted resequencing in non-model organisms. Scientific Reports 6: 24051. http://dx.doi.org/10.1038/srep24051

Additionally, please cite the Dryad data package:

Niedzicka M, Fijarczyk A, Dudek K, Stuglik M, Babik W (2016) Data from: Molecular Inversion Probes for targeted resequencing in non-model organisms. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q72b7
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