Data from: RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

Benestan L

Date Published: February 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.q771r.3

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title 10156 SNPs identified for Homarus americanus
Downloaded 63 times
Description VCF output of the 10156 SNPs identified for Homarus americanus through a RAD sequencing protocol.
Download 10156-586.recode.vcf (84.19 Mb)
Download README.txt (6.239 Kb)
Details View File Details
Title 8411snps-586ind
Downloaded 56 times
Description Data containing 8411 SNPs successfully genotyped in 586 lobsters.
Download 8411-586.recode.vcf (69.65 Mb)
Download README.txt (5.548 Kb)
Details View File Details
Title FST_GEOGRAPHICAL_DISTANCES
Downloaded 13 times
Description Geographic distances and FST values between each pair of sampling location
Download FST_GEOGRAPHICAL_DISTANCES.xlsx (54.83 Kb)
Details View File Details
Title Batch-catalogs for American lobster
Downloaded 5 times
Download batch_1.catalog.tags.tsv (583.8 Mb)
Details View File Details
Title Assignment results for 20 samples using THL method
Downloaded 4 times
Download assignment-20samples-regions.results.tsv (25.65 Kb)
Details View File Details
Title Assignment results for 36 samples using THL method
Downloaded 3 times
Download assignment-36samples-regions.results.tsv (28.05 Kb)
Details View File Details
Title Assignment results for 50 samples using THL method
Downloaded 4 times
Download assignment-50samples-regions.results.tsv (26.82 Kb)
Details View File Details
Title Assignment results for 100 samples using THL method
Downloaded 2 times
Download assignment-100samples-regions.results.tsv (27.36 Kb)
Details View File Details
Title Assignment results for the sites using LOO method (1 individual for ranking)
Downloaded 3 times
Download assignment.summary.stats.no.imputation.ra...es.tsv (12.83 Kb)
Details View File Details
Title Assignment results for regions using THL method (50% of individuals)
Downloaded 3 times
Download assignment.summary.stats.no.imputation.ra....5.tsv (2.815 Kb)
Details View File Details
Title Assignment results for sites using THL method (50% of individuals)
Downloaded 5 times
Download assignment.summary.stats.no.imputation.ra....5.tsv (15.16 Kb)
Details View File Details

When using this data, please cite the original publication:

Benestan L, Gosselin T, Perrier C, Sainte-Marie B, Rochette R, Bernatchez L (2015) RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus). Molecular Ecology 24(13): 3299-3315. http://dx.doi.org/10.1111/mec.13245

Additionally, please cite the Dryad data package:

Benestan L (2015) Data from: RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q771r.3
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Version History

Item Version Date Summary

* Selected Version

Search for data

Be part of Dryad

We encourage organizations to: