Data from: Successful recovery of nuclear protein-coding genes from small insects in museums using illumina sequencing

Kanda K, Pflug JM, Sproul JS, Dasenko MA, Maddison DR

Date Published: January 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.q7m07

 

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Title CarabidAnalysesFinalMainTrees
Downloaded 12 times
Description The NEXUS file written for Mesquite which was used to test for accurate phylogenetic placement of sequences obtained from Illumina sequencing of carabid museum specimens in the context of a larger phylogeny. The file contains matricies for seven genes and the trees produced by the analyses.
Download CarabidAnalysesFinalMainTrees.nex (31.65 Mb)
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Title BembidionTransversaleGroupAnalysis
Downloaded 5 times
Description The NEXUS file written for Mesquite we used to test for accuracy of Illumina sequences obtained from museum specimen carabids in the context of conspecific and very closely related species. The file contains matricies and phylogenetic trees for four genes.
Download BembidionTransversaleGroupAnalysis.nex (194.0 Kb)
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Title Lagriinae_AnalyzedMatrices
Downloaded 8 times
Description The NEXUS file written for Mesquite which was used to test for the accurate phylogenetic placement of Illumina sequences obtained from museum tenebrionid specimens in a larger phylogeny.
Download Lagriinae_AnalyzedMatrices.nex (622.8 Kb)
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Title FocalGene_QuerySet_Tribolium
Downloaded 9 times
Description The query sequences from the Tribolium castaneum genome which were used to identify fragments of 7 focal genes in reads from Illumina sequenced carabid and tenebrionid museum specimens.
Download FocalGene_QuerySet_Tribolium.fasta (9.112 Kb)
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Title NPG_QuerySet_Tribolium
Downloaded 5 times
Description Query sequences from the Tribolium castaneum genome which were used to detect the presence of 67 nuclear protein coding genes in Illumina reads of tenebrionid museum specimens.
Download NPG_QuerySet_Tribolium.fasta (53.20 Kb)
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Title Bembidion_transversale_DNA3205_67PCG
Downloaded 5 times
Description Query sequences from Bembidion transversale genomic reads which were used to detect the presence of 67 nuclear protein coding genes in Illumina reads of carabid museum specimens.
Download Bembidion_transversale_DNA3205_67PCG.fasta (46.45 Kb)
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When using this data, please cite the original publication:

Kanda K, Pflug JM, Sproul JS, Dasenko MA, Maddison DR (2015) Successful recovery of nuclear protein-coding genes from small insects in museums using illumina sequencing. PLOS ONE 10(12): e0143929. http://dx.doi.org/10.1371/journal.pone.0143929

Additionally, please cite the Dryad data package:

Kanda K, Pflug JM, Sproul JS, Dasenko MA, Maddison DR (2015) Data from: Successful recovery of nuclear protein-coding genes from small insects in museums using illumina sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q7m07
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