Data from: Variation in opsin genes correlates with signaling ecology in North American fireflies

Sander SE, Hall DW

Date Published: August 18, 2015

DOI: http://dx.doi.org/10.5061/dryad.q878c

 

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Title LW opsin nucleotide alignment
Downloaded 7 times
Description Long-wavelength opsin nucleotide sequence alignment for 38 North American firefly species (FASTA format).
Download LW_38tax_formatted.fasta (40.02 Kb)
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Title LW opsin amino acid alignment
Downloaded 6 times
Description Long-wavelength opsin amino acid sequence alignment for 38 North American firefly species (FASTA format).
Download LW_38_aa_formatted.fasta (13.87 Kb)
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Title UV opsin nucleotide alignment
Downloaded 8 times
Description Ultraviolet opsin nucleotide sequence alignment for 38 North American firefly taxa (FASTA format).
Download UV_38_formatted.fasta (44.01 Kb)
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Title UV opsin amino acid alignment
Downloaded 4 times
Description Ultraviolet opsin amino acid sequence alignment for 38 North American firefly species (FASTA format).
Download UV_38aa_formatted.fasta (15.20 Kb)
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Title Tree 1 (Stanger-Hall and Lloyd taxa + 14 taxa)
Downloaded 3 times
Description BEAST phylogeny constructed with taxa from Stanger-Hall and Lloyd (2015) plus 14 additional taxa. The tree has been trimmed to include only species used in this study.
Download BEAST_SL2015_plus14tax.tre (1.835 Kb)
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Title Tree 2 (Stanger-Hall and Lloyd taxa plus 32 taxa)
Downloaded 5 times
Description BEAST phylogeny constructed with taxa from Stanger-Hall and Lloyd (2015) plus 32 additional taxa. The tree has been trimmed to include only species used in this study. Its topology, presented in Text S3, differs slightly from Tree 1, which is presented in the main text.
Download BEAST_SL2015_plus32tax.tre (1.833 Kb)
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Title Transcriptome_assemblies
Downloaded 57 times
Description A zipped folder containing assembled transcriptomes for all 10 species used in this study. After qc, reads were assembled using Trinity with default parameters. These files give the resulting contigs in FASTA format. See README for more details.
Download Transcriptome_assemblies.zip (172.8 Mb)
Download README.txt (1.33 Kb)
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When using this data, please cite the original publication:

Sander SE, Hall DW (2015) Variation in opsin genes correlates with signaling ecology in North American fireflies. Molecular Ecology 24(18): 4679–4696. http://dx.doi.org/10.1111/mec.13346

Additionally, please cite the Dryad data package:

Sander SE, Hall DW (2015) Data from: Variation in opsin genes correlates with signaling ecology in North American fireflies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.q878c
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