Data from: Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus

MacManes M, Eisen M

Date Published: October 28, 2014

DOI: http://dx.doi.org/10.5061/dryad.qf1dp

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Brain derived contigs
Downloaded 1 time
Description These are the contigs derived from the RNA collected from brain tissue.
Download brain.final.fasta (97.87 Mb)
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Title Kidney derived contigs
Description Putative transcripts from renal tissue.
Download kidney.final.fasta (158.0 Mb)
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Title Liver derived transcripts
Description Putative transcripts from liver tissue.
Download liver.final.fasta (92.66 Mb)
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Title Testes derived transcripts
Description Putative transcripts from testes tissue.
Download testes.final.fasta (87.27 Mb)
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Title Pfam results
Description These are the results from the Pfam search against Pero.BLTK.fasta
Download pero.pfam (124.2 Mb)
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Title 4Tissue.transcripts
Description This file contains the putative transcripts from all tissues, and serves as the basis for most of the downstream analyses.
Download Pero.BLTK.fasta (191.1 Mb)
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Title Transcript expression
Description This file contains the expression data for all transcripts in the Pero.BLTK.fasta file.
Download Pero.tissue.xprs (8.476 Mb)
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Title Coding sequences
Description This file contains the predicted coding sequences
Download Pero.BLTK.cds (93.45 Mb)
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Title Analysis code
Description This file contains code used in the bioinformatic analyses.
Download analyses.md (5.476 Kb)
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When using this data, please cite the original publication:

MacManes MD, Eisen MB (2014) Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus. PeerJ 2:e642. http://dx.doi.org/10.7717/peerj.642

Additionally, please cite the Dryad data package:

MacManes M, Eisen M (2014) Data from: Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qf1dp
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