Data from: Differential Expression Analysis for Pathways

 

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Title DEAP Validation 1: Pathway Data
Downloaded 33 times
Description Representations of the simulated pathways from the section "DEAP Validation 1: Simulated Data on Simulated Pathways" in the *.edg format utilized for input into the DEAP algorithm.
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Title DEAP Validation 1: Expression Data
Downloaded 160 times
Description All simulated expression data used for the section "DEAP Validation 1: Simulated Data on Simulated Pathways". Data is in the TSV format used for input into the DEAP algorithm. Simulated data was generated as described in "Methods: Simulated Data". File naming indicates the variables input into the simulation algorithm.
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Title DEAP Validation 2: Pathway Data
Downloaded 46 times
Description Representations of the simulated pathways from the section "DEAP Validation 2: Simulated Data on Biological Pathways" in the *.edg format utilized for input into the DEAP algorithm.
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Title DEAP Validation 2: Expression Data Part 1
Downloaded 17 times
Description All simulated expression data used for the section "DEAP Validation 2: Simulated Data on Biological Pathways". Data is in the TSV format used for input into the DEAP algorithm. Simulated data was generated as described in "Methods: Simulated Data". File naming indicates the variables input into the simulation algorithm.
Download Validation2_ExpressionData_Part1.tar.gz (900.7 Mb)
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Title DEAP Validation 2: Expression Data Part 2
Downloaded 19 times
Description All simulated expression data used for the section "DEAP Validation 2: Simulated Data on Biological Pathways". Data is in the TSV format used for input into the DEAP algorithm. Simulated data was generated as described in "Methods: Simulated Data". File naming indicates the variables input into the simulation algorithm.
Download Validation2_ExpressionData_Part2.tar.gz (1.124 Gb)
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When using this data, please cite the original publication:

Haynes WA, Higdon R, Stanberry L, Collins D, Kolker E (2013) Differential Expression Analysis for Pathways. PLoS Computational Biology 9(3): e1002967. http://dx.doi.org/10.1371/journal.pcbi.1002967

Additionally, please cite the Dryad data package:

Haynes WA, Higdon R, Stanberry L, Collins D, Kolker E (2013) Data from: Differential Expression Analysis for Pathways. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qh1pg
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