Data from: The impact of rate heterogeneity on inference of phylogenetic models of trait evolution

Chira AM, Thomas GH

Date Published: September 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.qj367

 

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Title Simulation code
Downloaded 15 times
Description Functions that simulate trees and associated tip-trait data under various scenarios of rate-heterogeneity.
Download paper_man_sim_code.R (36.23 Kb)
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Title Median scaled tree (BAMM)
Downloaded 10 times
Description Function that outputs the median scaled tree (a tree with branches scaled by the rate of evolution) obtained by fitting BAMM on a tree & the associated tip trait data. The function computes the per-branch median rates across the posterior tree distribution.
Download paper_man_median_BAMM.R (1.433 Kb)
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Title Rate-heterogeneity prevalence and patterns
Downloaded 13 times
Description Functions that determine the patterns and prevalence of trait rate-heterogeneity across trees, using as input scaled trees obtained after fitting variable-rates models to the phylogeny & associated tip trait data.
Download paper_man_heterogeneity_patterns.R (7.669 Kb)
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When using this data, please cite the original publication:

Chira AM, Thomas GH (2016) The impact of rate heterogeneity on inference of phylogenetic models of trait evolution. Journal of Evolutionary Biology 29(12): 2502-2518. http://dx.doi.org/10.1111/jeb.12979

Additionally, please cite the Dryad data package:

Chira AM, Thomas GH (2016) Data from: The impact of rate heterogeneity on inference of phylogenetic models of trait evolution. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qj367
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