Data from: Rarefaction and extrapolation: making fair comparison of abundance-sensitive phylogenetic diversity among multiple assemblages

Hsieh TC, Chao A

Date Published: August 24, 2016

DOI: http://dx.doi.org/10.5061/dryad.qk58h

 

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Title Appendix A Final (Replication Principle)
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Description Replication principle for species diversity and phylogenetic diversity
Download Appendix A Final (Replication Principle).pdf (107.6 Kb)
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Title Appendix B Final (Extrapolation)
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Description Extrapolation formulas for phylogenetic diversity
Download Appendix B Final (Extrapolation).pdf (182.9 Kb)
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Title Appendix C Final (Simulation Studies)
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Description Using simulation to test the proposed methods
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Title Appendix D Final (BacterialData)
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Description The 16S rRNA sequence bacterial biota data and phylogenetic tree from the human distal esophagus
Download Appendix D Final (BacterialData).pdf (107.4 Kb)
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Title Appendix E Final (BatData)
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Description Rarefaction and extrapolation analysis for bat data
Download Appendix E Final (BatData).pdf (178.4 Kb)
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Title Appendix F Final (Comparison)
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Description Comparison of rarefaction/extrapolation sampling curves for species diversity and phylogenetic diversity
Download Appendix F Final (Comparison).pdf (214.0 Kb)
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Title Appendix G Final (reference points)
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Description Relationship between the phylogenetic diversities of two temporal reference points
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Title Appendix H Final (IncidenceData)
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Description Rarefaction and extrapolation of abundance-sensitive phylogenetic diversity based on incidence data
Download Appendix H Final (IncidenceData).pdf (184.2 Kb)
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When using this data, please cite the original publication:

Hsieh T, Chao A (2017) Rarefaction and extrapolation: making fair comparison of abundance-sensitive phylogenetic diversity among multiple assemblages. Systematic Biology 66(1): 100-111. http://dx.doi.org/10.1093/sysbio/syw073

Additionally, please cite the Dryad data package:

Hsieh TC, Chao A (2016) Data from: Rarefaction and extrapolation: making fair comparison of abundance-sensitive phylogenetic diversity among multiple assemblages. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qk58h
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