Data from: Use of genotyping-by-sequencing data to develop a high-throughput and multi-functional SNP panel for conservation applications in Pacific lamprey

Hess JE, Campbell NR, Docker MF, Baker C, Jackson A, Lampman R, McIlraith B, Moser ML, Statler DP, Young WP, Wildbill AJ, Narum SR

Date Published: May 15, 2014

DOI: http://dx.doi.org/10.5061/dryad.qk60s

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title IdentifyLoci_SpeciesDiagnostic Perl Script
Downloaded 19 times
Description The "IdentifyLoci.pl" PERL script (original script described by Hecht et al. 2013) was modified such that it only identified SNP variations among but not within species collections, effectively ignoring within species variations. Hecht BC, Campbell NR, Holecek DE, Narum SR (2013) Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Molecular Ecology, 22, 3061–3076 doi: 10.1111/mec.12082.
Download IdentifyLoci_SpeciesDiagnostic.pl (4.427 Kb)
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Title EtrMERdryad_96SNPdataset
Downloaded 30 times
Description The individuals from collections described in Table S2 are included with all details of their relevant metadata and 96 SNP genotypic data. SNP data is in raw 2 column format in which the nucleotide of allele 1 and allele 2 are shown.
Download EtrMERdryad_96SNPdataset.xlsx (1.270 Mb)
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When using this data, please cite the original publication:

Hess JE, Campbell NR, Docker MF, Baker C, Jackson A, Lampman R, McIlraith B, Moser ML, Statler DP, Young WR, Wildbill AJ, Narum SR (2015) Use of genotyping-by-sequencing data to develop a high-throughput and multi-functional SNP panel for conservation applications in Pacific lamprey. Molecular Ecology Resources 15(1): 187-202. http://dx.doi.org/10.1111/1755-0998.12283

Additionally, please cite the Dryad data package:

Hess JE, Campbell NR, Docker MF, Baker C, Jackson A, Lampman R, McIlraith B, Moser ML, Statler DP, Young WP, Wildbill AJ, Narum SR (2014) Data from: Use of genotyping-by-sequencing data to develop a high-throughput and multi-functional SNP panel for conservation applications in Pacific lamprey. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qk60s
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