Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

 

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Title Supplemental Figures
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Title Supplemental-data- GPhoCS-output
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Title Supplementary Tables
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Title Supplementary Methods
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Title full
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Description Fasta alignments of sequences from ultraconserved elements containing up to eight individuals from each of five study species. All alignments in a given species that contain at least one individual in each of four areas of endemism are included.
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Title orthologs
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Description Fasta alignments of sequences from ultraconserved elements containing up to eight individuals from each of five study species. Only the 166 loci that are present in all five full datasets are included.
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Title interspecies_full
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Description Fasta alignments of sequences from ultraconserved elements containing up to thirty-six individuals from five study species. Alignments include samples from all species, and any loci for which data was recovered for at least two individuals.
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Title interspecies_reduced
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Description Fasta alignments of sequences from ultraconserved elements containing up to thirty-six individuals from five study species. Alignments include samples from all species, but only loci for which at least one individual is represented in every area of endemism in all study species.
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Title mtDNA_UCE_taxa
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Description Mitochondrial DNA sequences from the gene cytochrome b from the same samples for which UCE data were obtained.
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When using this data, please cite the original publication:

Smith BT, Harvey MG, Faircloth BC, Glenn TC, Brumfield RT (2013) Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales. Systematic Biology 63(1): 83-95. http://dx.doi.org/10.1093/sysbio/syt061

Additionally, please cite the Dryad data package:

Smith BT, Harvey MG, Faircloth BC, Glenn TC, Brumfield RT (2013) Data from: Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qm4j1.3
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