Data from: Gene expression, chromosome heterogeneity and the fast-X effect in mammals

Nguyen L, Galtier N, Nabholz B

Date Published: January 27, 2015

DOI: http://dx.doi.org/10.5061/dryad.qr20n

 

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Title Table_S1 - Datasets
Description Datasets used in the main statistical analyses of the study. Details of column headings : gene : Ensembl accession number (human); Species; labs : Species+Chromosome; chrMark : X or Autosomes; chr : Chromosome number; dN : Number of nonsynonymous substitutions; dS: Number of synonymous substitutions , dNdS : ratio of dN/dS; RPKM : Expression level in Reads Per Kilobase per Million sequenced Reads; Tau : Expression specificity, GC3 : GC content of the third codon position
Download Table_S1.csv (1.610 Mb)
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Title Alignments
Description Alignments were obtained from ORTHOMAM v6 (http://www.orthomam.univ-montp2.fr/) and then cleaned using Gblocks (see materials and methods for details). Alignment names correspond to Ensembl accession number and match the datasets (Table_S1).
Download omm_DNA_fasta.36tax_CDS.gblocks.zip (55.92 Mb)
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When using this data, please cite the original publication:

Nguyen L, Galtier N, Nabholz B (2015) Gene expression, chromosome heterogeneity and the fast-X effect in mammals. Biology Letters 11(2): 20150010. http://dx.doi.org/10.1098/rsbl.2015.0010

Additionally, please cite the Dryad data package:

Nguyen L, Galtier N, Nabholz B (2015) Data from: Gene expression, chromosome heterogeneity and the fast-X effect in mammals. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qr20n
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