Data from: Impacts of temperature and lunar day on gene expression profiles during a monthly reproductive cycle in the brooding coral Pocillopora damicornis

Crowder CM, Meyer E, Fan T, Weis VM

Date Published: April 26, 2017

DOI: http://dx.doi.org/10.5061/dryad.qt584

 

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Title Pdamicornis_reference_transcriptome
Downloaded 6 times
Description This file is a reference transcriptome for the coral Pocillopora damicornis. The reference contains 78,519 transcripts that represent the longest subcomponent of each subcomponent isogroup from the Trinity assembly. The raw reads used for the Trinity assembly are described in the following publication: Vidal-Dupiol J, Zoccola D, Tambutté E, et al. (2013) Genes related to ion-transport and energy production are upregulated in response to CO 2-driven pH decrease in corals: new insights from transcriptome analysis. PloS ONE, 8, e58652.
Download longest_sc_Pdam_transcriptome_trinity.fasta (43.78 Mb)
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Title raw counts file
Downloaded 3 times
Description Raw counts of the 46,807 transcripts that had sequenced reads mapped to them, using the program SHRiMP (version 2.2.2).
Download raw_counts_Trinity_mapping.txt (2.873 Mb)
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When using this data, please cite the original publication:

Crowder CM, Meyer E, Fan T, Weis VM (2017) Impacts of temperature and lunar day on gene expression profiles during a monthly reproductive cycle in the brooding coral Pocillopora damicornis. Molecular Ecology 26(15): 3913-3925. http://dx.doi.org/10.1111/mec.14162

Additionally, please cite the Dryad data package:

Crowder CM, Meyer E, Fan T, Weis VM (2017) Data from: Impacts of temperature and lunar day on gene expression profiles during a monthly reproductive cycle in the brooding coral Pocillopora damicornis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.qt584
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