Data from: Shotgun microbial profiling of fossil remains

Der Sarkissian C, Ermini L, Jónsson H, Alekseev AN, Crubézy É, Shapiro B, Orlando L

Date Published: February 6, 2014

DOI: http://dx.doi.org/10.5061/dryad.r0056

 

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Title BaARE.Equus_cab_mito
Downloaded 16 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample BaARE.
Download BaARE.Equus_cab_mito.bam (22.96 Kb)
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Title BaB.Equus_cab_mito
Downloaded 9 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample BaB.
Download BaB.Equus_cab_mito.bam (4.382 Kb)
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Title BaBRE.Equus_cab_mito
Downloaded 7 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample BaBRE.
Download BaBRE.Equus_cab_mito.bam (11.46 Kb)
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Title OS.Equus_cab_mito
Downloaded 6 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample OS.
Download OS.Equus_cab_mito.bam (3.575 Kb)
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Title OSRE.Equus_cab_mito
Downloaded 8 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample OSRE.
Download OSRE.Equus_cab_mito.bam (6.552 Kb)
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Title Ta.Equus_cab_mito
Downloaded 8 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample Ta.
Download Ta.Equus_cab_mito.bam (1.605 Kb)
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Title TaRE.Equus_cab_mito
Downloaded 13 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample TaRE.
Download TaRE.Equus_cab_mito.bam (15.00 Kb)
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Title TP3.Equus_cab_mito
Downloaded 5 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample TP3.
Download TP3.Equus_cab_mito.bam (78.77 Kb)
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Title TP3RE.Equus_cab_mito
Downloaded 7 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample TP3RE.
Download TP3RE.Equus_cab_mito.bam (88.33 Kb)
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Title Tu.Equus_cab_mito
Downloaded 10 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample Tu.
Download Tu.Equus_cab_mito.bam (27.27 Kb)
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Title TuRE.Equus_cab_mito
Downloaded 11 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample TuRE.
Download TuRE.Equus_cab_mito.bam (116.4 Kb)
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Title Ty.Equus_cab_mito
Downloaded 9 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample Ty.
Download Ty.Equus_cab_mito.bam (2.203 Kb)
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Title TyRE.Equus_cab_mito
Downloaded 6 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample TyRE.
Download TyRE.Equus_cab_mito.bam (12.64 Kb)
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Title Ya.Equus_cab_mito
Downloaded 6 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample Ya.
Download Ya.Equus_cab_mito.bam (3.21 Kb)
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Title YaRE.Equus_cab_mito
Downloaded 9 times
Description Alignment to the Equus caballus mitochondrial reference genome for sample YaRE.
Download YaRE.Equus_cab_mito.bam (49.96 Kb)
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Title BaARE.Equus_cab_nucl
Downloaded 10 times
Description Alignment to the Equus caballus nuclear reference genome for sample BaARE.
Download BaARE.Equus_cab_nucl.bam (24.94 Mb)
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Title BaB.Equus_cab_nucl
Downloaded 4 times
Description Alignment to the Equus caballus nuclear reference genome for sample BaB.
Download BaB.Equus_cab_nucl.bam (4.110 Mb)
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Title BaBRE.Equus_cab_nucl
Downloaded 6 times
Description Alignment to the Equus caballus nuclear reference genome for sample BaBRE.
Download BaBRE.Equus_cab_nucl.bam (19.89 Mb)
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Title OS.Equus_cab_nucl
Downloaded 10 times
Description Alignment to the Equus caballus nuclear reference genome for sample OS.
Download OS.Equus_cab_nucl.bam (1.896 Mb)
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Title OSRE.Equus_cab_nucl
Downloaded 9 times
Description Alignment to the Equus caballus nuclear reference genome for sample OSRE.
Download OSRE.Equus_cab_nucl.bam (3.122 Mb)
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Title Ta.Equus_cab_nucl
Downloaded 9 times
Description Alignment to the Equus caballus nuclear reference genome for sample Ta.
Download Ta.Equus_cab_nucl.bam (4.114 Mb)
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Title TaRE.Equus_cab_nucl
Downloaded 4 times
Download TaRE.Equus_cab_nucl.bam (16.65 Mb)
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Title TP3.Equus_cab_nucl
Downloaded 6 times
Description Alignment to the Equus caballus nuclear reference genome for sample TP3.
Download TP3.Equus_cab_nucl.bam (476.0 Mb)
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Title TP3RE.Equus_cab_nucl
Downloaded 7 times
Description Alignment to the Equus caballus nuclear reference genome for sample TP3RE.
Download TP3RE.Equus_cab_nucl.bam (686.7 Mb)
Details View File Details
Title Tu.Equus_cab_nucl
Downloaded 6 times
Description Alignment to the Equus caballus nuclear reference genome for sample Tu.
Download Tu.Equus_cab_nucl.bam (87.45 Mb)
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Title TuRE.Equus_cab_nucl
Downloaded 5 times
Description Alignment to the Equus caballus nuclear reference genome for sample TuRE.
Download TuRE.Equus_cab_nucl.bam (547.6 Mb)
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Title Ty.Equus_cab_nucl
Downloaded 6 times
Description Alignment to the Equus caballus nuclear reference genome for sample Ty.
Download Ty.Equus_cab_nucl.bam (7.404 Mb)
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Title TyRE.Equus_cab_nucl
Downloaded 7 times
Description Alignment to the Equus caballus nuclear reference genome for sample TyRE.
Download TyRE.Equus_cab_nucl.bam (23.40 Mb)
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Title BaARE.Homo_sapiens_nucl
Downloaded 11 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample BaARE.
Download BaARE.Homo_sapiens_nucl.bam (852.4 Kb)
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Title BaB.Homo_sapiens_nucl
Downloaded 7 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample BaB.
Download BaB.Homo_sapiens_nucl.bam (280.5 Kb)
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Title BaBRE.Homo_sapiens_nucl
Downloaded 8 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample BaBRE.
Download BaBRE.Homo_sapiens_nucl.bam (732.6 Kb)
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Title OS.Homo_sapiens_nucl
Downloaded 10 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample OS.
Download OS.Homo_sapiens_nucl.bam (101.0 Kb)
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Title OSRE.Homo_sapiens_nucl
Downloaded 6 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample OSRE.
Download OSRE.Homo_sapiens_nucl.bam (368.0 Kb)
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Title Ta.Homo_sapiens_nucl
Downloaded 7 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Ta.
Download Ta.Homo_sapiens_nucl.bam (203.1 Kb)
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Title TaRE.Homo_sapiens_nucl
Downloaded 7 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TaRE.
Download TaRE.Homo_sapiens_nucl.bam (646.3 Kb)
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Title TP3.Homo_sapiens_nucl
Downloaded 5 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TP3.
Download TP3.Homo_sapiens_nucl.bam (5.695 Mb)
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Title TP3RE.Homo_sapiens_nucl
Downloaded 7 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TP3RE.
Download TP3RE.Homo_sapiens_nucl.bam (10.31 Mb)
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Title Tu.Homo_sapiens_nucl
Downloaded 8 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Tu.
Download Tu.Homo_sapiens_nucl.bam (2.088 Mb)
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Title TuRE.Homo_sapiens_nucl
Downloaded 6 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TuRE.
Download TuRE.Homo_sapiens_nucl.bam (10.24 Mb)
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Title Ty.Homo_sapiens_nucl
Downloaded 7 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Ty.
Download Ty.Homo_sapiens_nucl.bam (848.3 Kb)
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Title TyRE.Homo_sapiens_nucl
Downloaded 4 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample TyRE.
Download TyRE.Homo_sapiens_nucl.bam (2.614 Mb)
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Title Ya.Homo_sapiens_nucl
Downloaded 7 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample Ya.
Download Ya.Homo_sapiens_nucl.bam (253.4 Kb)
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Title YaRE.Homo_sapiens_nucl
Downloaded 10 times
Description Alignment to the Homo sapiens nuclear and mitochondrial reference genomes for sample YaRE.
Download YaRE.Homo_sapiens_nucl.bam (873.2 Kb)
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Title BaARE_metaphlan
Downloaded 10 times
Description MetaPhlAn microbial profile for sample BaARE.
Download BaARE_metaphlan.txt (8.546 Kb)
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Title BaB_metaphlan
Downloaded 9 times
Description MetaPhlAn microbial profile for sample BaB.
Download BaB_metaphlan.txt (7.658 Kb)
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Title BaBRE_metaphlan
Downloaded 13 times
Description MetaPhlAn microbial profile for sample BaBRE.
Download BaBRE_metaphlan.txt (13.04 Kb)
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Title OS_metaphlan
Downloaded 7 times
Description MetaPhlAn microbial profile for sample OS.
Download OS_metaphlan.txt (8.682 Kb)
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Title OSRE_metaphlan
Downloaded 9 times
Description MetaPhlAn microbial profile for sample OSRE.
Download OSRE_metaphlan.txt (9.219 Kb)
Details View File Details
Title Ta_metaphlan
Downloaded 10 times
Description MetaPhlAn microbial profile for sample Ta.
Download Ta_metaphlan.txt (10.12 Kb)
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Title TaRE_metaphlan
Downloaded 9 times
Description MetaPhlAn microbial profile for sample TaRE.
Download TaRE_metaphlan.txt (7.295 Kb)
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Title TP1_metaphlan
Downloaded 4 times
Description MetaPhlAn microbial profile for sample TP1.
Download TP1_metaphlan.txt (2.078 Kb)
Details View File Details
Title TP1RE_metaphlan
Downloaded 8 times
Description MetaPhlAn microbial profile for sample TP1RE.
Download TP1RE_metaphlan.txt (6.334 Kb)
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Title TP2_metaphlan
Downloaded 7 times
Description MetaPhlAn microbial profile for sample TP2.
Download TP2_metaphlan.txt (1.871 Kb)
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Title TP3_metaphlan
Downloaded 10 times
Description MetaPhlAn microbial profile for sample TP3.
Download TP3_metaphlan.txt (12.06 Kb)
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Title TP3RE_metaphlan
Downloaded 8 times
Description MetaPhlAn microbial profile for sample TP3RE.
Download TP3RE_metaphlan.txt (10.24 Kb)
Details View File Details
Title TuRE_metaphlan
Downloaded 7 times
Description MetaPhlAn microbial profile for sample TuRE.
Download TuRE_metaphlan.txt (3.881 Kb)
Details View File Details
Title Ty_metaphlan
Downloaded 11 times
Description MetaPhlAn microbial profile for sample Ty.
Download Ty_metaphlan.txt (7.427 Kb)
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Title TyRE_metaphlan
Downloaded 8 times
Description MetaPhlAn microbial profile for sample TyRE.
Download TyRE_metaphlan.txt (7.683 Kb)
Details View File Details
Title Ya_metaphlan
Downloaded 4 times
Description MetaPhlAn microbial profile for sample Ya.
Download Ya_metaphlan.txt (5.899 Kb)
Details View File Details
Title YaRE_metaphlan
Downloaded 9 times
Description MetaPhlAn microbial profile for sample YaRE.
Download YaRE_metaphlan.txt (7.668 Kb)
Details View File Details
Title Ancient_Horse_Metagenomics_RScript
Downloaded 110 times
Description R script for analysing microbial profiles generated by MetaPhlAn.
Download Ancient_Horse_Metagenomics_RScript.txt (7.414 Kb)
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Title plots_horses_MapDamage
Downloaded 10 times
Description map Damage profile of endogenous DNA
Download plots_horses_MapDamage.tar (2.600 Mb)
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Title plots_microbes_MapDamage
Downloaded 8 times
Description Map Damage profile of bacteria
Download plots_microbes_MapDamage.tar (870.4 Kb)
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When using this data, please cite the original publication:

Der Sarkissian C, Ermini L, Jónsson H, Alekseev AN, Crubézy É, Shapiro B, Orlando L (2014) Shotgun microbial profiling of fossil remains. Molecular Ecology 23(7): 1780-1798. http://dx.doi.org/10.1111/mec.12690

Additionally, please cite the Dryad data package:

Der Sarkissian C, Ermini L, Jónsson H, Alekseev AN, Crubézy É, Shapiro B, Orlando L (2014) Data from: Shotgun microbial profiling of fossil remains. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r0056
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