Data from: Squamate Conserved Loci (SqCL): a unified set of conserved loci for phylogenomics and population genetics of squamate reptiles

Singhal S, Grundler M, Colli G, Rabosky DL

Date Published: April 12, 2017

DOI: http://dx.doi.org/10.5061/dryad.r0q02

 

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Title pseudo-reference genomes for species included in study
Downloaded 35 times
Description pseudo-reference genomes for the 44 species included in this study and one outgroup; each file is annotated with respect to our targets
Download PRG.zip (59.02 Mb)
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Title VCF for Colobosaura modesta
Downloaded 4 times
Description variant data for Colobosaura modesta, including variant and invariant sites; filtered for coverage >=10x and quality >=20 and phased using read-backed phasing
Download Colobosaura_modesta.qual_filtered.cov_filt...cf.gz (68.84 Mb)
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Title VCF for Bothrops moojeni
Downloaded 3 times
Description variant data for Bothrops moojeni, including variant and invariant sites; filtered for coverage >=10x and quality >=20 and phased using read-backed phasing
Download Bothrops_moojeni.qual_filtered.cov_filtere...cf.gz (57.29 Mb)
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When using this data, please cite the original publication:

Singhal S, Grundler M, Colli G, Rabosky DL (2017) Squamate Conserved Loci (SqCL): a unified set of conserved loci for phylogenomics and population genetics of squamate reptiles. Molecular Ecology Resources, online in advance of print. http://dx.doi.org/10.1111/1755-0998.12681

Additionally, please cite the Dryad data package:

Singhal S, Grundler M, Colli G, Rabosky DL (2017) Data from: Squamate Conserved Loci (SqCL): a unified set of conserved loci for phylogenomics and population genetics of squamate reptiles. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r0q02
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