Data from: The coral immune response facilitates protection against microbes during tissue regeneration

van de Water JAJM, Ainsworth TD, Leggat W, Bourne DG, Matz MV, Willis BL, van Oppen MJH

Date Published: June 2, 2015

DOI: http://dx.doi.org/10.5061/dryad.r24b1

 

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Title 16S rRNA amplicon sequencing - QIIME analysis
Downloaded 12 times
Description This archive file contains all input and output files required for and produced by the QIIME pipeline in the 'dataset' folder. The quality file Wound.qual and the sequence file Wound.fna along with the mapping files Map.txt and Map_corrected2.txt are the primary input files. Output files include the complete selection of OTU tables (otu_table.biom, Normalised_otu_table.biom as well the weighted and unweighted Unifrac tables). Additional special files required for analysis can be found in the 'input' folder. The script 'QIIME Analysis script.txt' was used for data analysis and the file 'Sample names.txt' should be used to determine the biological sample / treatment corresponding to each sample. Sequences have been deposited in the NCBI Sequence Read Archive (SRA) database under study accession number SRP052969.
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Title Immune parameter data
Downloaded 39 times
Description This archive file contains the data files for the expression levels of the range of immune parameters presented in the manuscript: 1) Chromoprotein expression levels, 2) Fluorescent protein expression levels, 3) Immune gene expression levels and 4) PO and tpPO activity levels. Each file contains a description of the samples and sample names used.
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Title Fluorescent Protein Analysis Methodology
Downloaded 9 times
Description This archive file contains the files required for the fluorescent protein spectral analysis. The input file Wounding_Aaspera_fl.csv containing the raw fluorescence values and sample protein concentration is provided along with the reference fluorescent protein data file modelspecs_interp_25sh.csv (based on the spectrum of purified Acropora millepora fluorescent proteins) and the spectral decomposition script specs_regression_WF.R. The reference fluorescent protein data and the script were provided by Mikhail Matz.
Download Fluorescent Protein Analysis Methodology.zip (55.42 Kb)
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When using this data, please cite the original publication:

van de Water JAJM, Ainsworth TD, Leggat W, Bourne DG, Willis BL, van Oppen MJH (2015) The coral immune response facilitates protection against microbes during tissue regeneration. Molecular Ecology 24(13): 3390-3404. http://dx.doi.org/10.1111/mec.13257

Additionally, please cite the Dryad data package:

van de Water JAJM, Ainsworth TD, Leggat W, Bourne DG, Matz MV, Willis BL, van Oppen MJH (2015) Data from: The coral immune response facilitates protection against microbes during tissue regeneration. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r24b1
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