Data from: Phylogenetic relationships, breeding implications, and cultivation history of Hawaiian taro (Colocasia esculenta) through genome-wide SNP genotyping

Helmkampf M, Wolfgruber TK, Bellinger MR, Paudel R, Kantar MB, Miyasaka SC, Kimball H, Brown A, Veillet A, Read A, Shintaku M

Date Published: August 8, 2017

DOI: https://doi.org/10.5061/dryad.r35kr

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Title HawaiianTaro_SNP.vcf
Downloaded 7 times
Description Zip archive of eight SNP datasets in VCF format, obtained by four SNP calling methods: GBS+RAD, GBS subset, transcriptome, and UNEAK (see Materials and methods). Each was filtered by minor allele count ≥ 2 (mac2) and minor allele frequency ≥ 0.1 (maf10). The primary dataset was based on GBS+RAD and mac2.
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Title HawaiianTaro_SNP.fas
Downloaded 5 times
Description ZIP archive of two SNP datasets used for phylogenetic analyses in FASTA format, homozygous positions only (nomenclature see VCF files).
Download HawaiianTaro_SNP.fas.zip (68.47 Kb)
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When using this data, please cite the original publication:

Helmkampf M, Wolfgruber TK, Bellinger MR, Paudel R, Kantar MB, Miyasaka SC, Kimball H, Brown A, Veillet A, Read A, Shintaku M (2017) Phylogenetic relationships, breeding implications, and cultivation history of Hawaiian taro (Colocasia esculenta) through genome-wide SNP genotyping. Journal of Heredity, online in advance of print. https://doi.org/10.1093/jhered/esx070

Additionally, please cite the Dryad data package:

Helmkampf M, Wolfgruber TK, Bellinger MR, Paudel R, Kantar MB, Miyasaka SC, Kimball H, Brown A, Veillet A, Read A, Shintaku M (2017) Data from: Phylogenetic relationships, breeding implications, and cultivation history of Hawaiian taro (Colocasia esculenta) through genome-wide SNP genotyping. Dryad Digital Repository. https://doi.org/10.5061/dryad.r35kr
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