Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies

Hearn J, Stone GN, Nicholls JA, Barton NH, Lohse K

Date Published: October 1, 2013

DOI: http://dx.doi.org/10.5061/dryad.r3r60

 

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Title Biorhiza pallida transcriptome built using Trinity
Downloaded 6 times
Description This transcriptome is assembled from larval B. pallida collected in Dorset, United Kingdom for another project. Headers are in the Trinity assembler format
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Title Biorhiza_pallida.meta-assembly.fa
Downloaded 8 times
Description Biorhiza pallida combined assembly using clc bio v4.0.3
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Title Belizinella_gibbera.meta-assembly.fa
Downloaded 9 times
Description Belizinella gibbera combined assembly assembled by clc bio v4.0.3
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Title tar archive of 2kb alignments
Downloaded 4 times
Description tar archive containing all 4 combinations of 2kb alignments
Download 2kb.tgz (9.750 Mb)
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Title tar archive of alignment summaries for mathematica
Downloaded 6 times
Description Contains 4 files each summarizing one of the 2kb alignments used as mathematica input
Download counts.tgz (61.54 Kb)
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Title scripts_for_Hearn_et_al
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Description Tar archive of custom scripts referred to in Hearn et al 2013. Includes a document summarising each script
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Title Bpal.BLAST_and_Coverage_filtered_noINDELS_2609.vcf
Downloaded 2 times
Description VCF file for Biorhiza pallida ingroup individuals created using samtools. Contaminant and high coverage sequences have been removed from this file. The VCF_haploif_parser.pl script was run on this file.
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Title Bgib.BLAST_and_Coverage_filtered_noINDELS_2609.vcf
Downloaded 1 time
Description VCF file of the outgroup Belizinella gibbera, contaminant and high coverage contigs removed. Produced using samtools mpileup.
Download Bgib.BLAST_and_Coverage_filtered_noINDELS_...cf.gz (736.2 Mb)
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When using this data, please cite the original publication:

Hearn J, Stone GN, Nicholls JA, Barton NH, Lohse K (2014) Likelihood-based inference of population history from low coverage de novo genome assemblies. Molecular Ecology 23(1): 198-211. http://dx.doi.org/10.1111/mec.12578

Additionally, please cite the Dryad data package:

Hearn J, Stone GN, Nicholls JA, Barton NH, Lohse K (2013) Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r3r60
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