Data from: Using Pool-seq to search for genomic regions affected by hybrid inviability in the copepod T. californicus

Lima TG, Willett CS

Date Published: December 27, 2017

DOI: https://doi.org/10.5061/dryad.r3v52

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Title Genotypes for individual F2 hybrids
Downloaded 1 time
Description Genotypes for F2 hybrids from crosses between the San Diego (SD) and Abalone Cove (AB) populations of the copepod Tigriopus californicus. Individuals were genotyped at 14 PCR based markers across the 12 chromosomes. AB refers to the AB homozygous genotype, SD is homozygous SD and H refers to heterozygotes.
Download Genotypes.xlsx (43.91 Kb)
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Title Allele frequency per SNP for F2 hybrids
Downloaded 1 time
Description Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are in reference to the AB population. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
Download DAN_DAA_all_chrm_AF.txt (92.09 Mb)
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Title Allele frequency for F2 hybrids after sliding window averaging of 500 SNP
Downloaded 1 time
Description Allele frequencies from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 500 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
Download DAN_DAA_slwin500.txt (166.1 Kb)
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Title Allele frequency for F2 hybrids after sliding window averaging of 1000 SNP
Downloaded 1 time
Description Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 1000 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
Download DAN_DAA_slwin1000.txt (82.94 Kb)
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Title Allele frequency for F2 hybrids after sliding window averaging of 2000 SNP
Downloaded 1 time
Description Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 2000 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
Download DAN_DAA_slwin2000.txt (41.36 Kb)
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Title Allele frequency for F2 hybrids after sliding window averaging of 3000 SNP
Downloaded 1 time
Description Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 3000 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
Download DAN_DAA_slwin3000.txt (27.55 Kb)
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When using this data, please cite the original publication:

Lima TG, Willett CS (2018) Using Pool-seq to search for genomic regions affected by hybrid inviability in the copepod T. californicus. Journal of Heredity, online in advance of print. https://doi.org/10.1093/jhered/esx115

Additionally, please cite the Dryad data package:

Lima TG, Willett CS (2018) Data from: Using Pool-seq to search for genomic regions affected by hybrid inviability in the copepod T. californicus. Dryad Digital Repository. https://doi.org/10.5061/dryad.r3v52
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