Data from: Avoidable errors in the modeling of outbreaks of emerging pathogens, with special reference to Ebola

King AA, Domenech de Cellès M, Magpantay FMG, Rohani P

Date Published: March 5, 2015

DOI: http://dx.doi.org/10.5061/dryad.r5f30

 

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Title Model and data
Description Constructs the pomp object encoding the model and the data.
Download ebola.R (6.607 Kb)
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Title Simulation study
Description These codes perform the simulation study described in the text.
Download simstudy.R (7.734 Kb)
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Title Parameter estimation
Downloaded 1 time
Description These codes estimate for the model from the data in Sierra Leone, Guinea, and Liberia, as well as for the regional aggregation ("West Africa").
Download profiles.R (10.48 Kb)
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Title Diagnostics
Description These codes compute various diagnostics on the fitted models.
Download diagnostics.R (3.623 Kb)
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Title Forecasting codes
Description These codes compute the forecasts described in the text.
Download forecasts.R (6.531 Kb)
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When using this data, please cite the original publication:

King AA, Domenech de Cellès M, Magpantay FMG, Rohani P (2015) Avoidable errors in the modeling of outbreaks of emerging pathogens, with special reference to Ebola. Proceedings of the Royal Society B 282(1806): 20150347. http://dx.doi.org/10.1098/rspb.2015.0347

Additionally, please cite the Dryad data package:

King AA, Domenech de Cellès M, Magpantay FMG, Rohani P (2015) Data from: Avoidable errors in the modeling of outbreaks of emerging pathogens, with special reference to Ebola. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r5f30
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