Data from: Using genetic techniques to quantify reinvasion, survival and in-situ breeding rates during control/eradication operations

 

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Title Secretary Island & mainland stoat haplotypes
Downloaded 49 times
Description Microsatellite genotypes of the Secretary Island stoat population over time. This is formatted to be used as an input for the GeneChart R code. Column 1 = sample id, column 2 = population, subsequent columns are the loci with microsatellite sizes. Population codes are: "Mainland" = mainland, y2005 = Secretary Island captures in 2005, y2006 = Secretary Island captures in 2006, etc. Missing values = 0. Allele names at the top of each column. Each locus has two columns, one for each allele, and the names are the locus name followed by .a1 and .a2 for allele one and allele two.
Download Secretary-Genechart-input.csv (34.76 Kb)
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Title GeneChart R code
Downloaded 65 times
Description This is the R code for the GeneChart assignment used in the paper. The main commands are at the top. Select the Secretary-Genechart.input.csv as stoat.dat. Read in this R code using source(file.choose()). Plot the chart using the command: chart.func(stoat.dat, refpopnames=c("Mainland", "y2005"), include.pops=c("y2006", "y2007", "y2008","y2009")) title(main="..."). This code will then produce a GeneChart assignment using the Mainland and Secretary Island 2005 captures as reference populations, and attempt to assign subsequent Secretary Island captures (from 2006 - 2009) onto this chart. The reference populations and additional included populations can be modified in the command.
Download RfuncSec-col.R (52.06 Kb)
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Title Sample description - (age,sex,location,time of capture)
Downloaded 14 times
Description Sample number codes = Location - year of capture - month of capture - trap number, S(M) = mainland, SI=Secretary Island
Download Age - Sex data.xlsx (64.32 Kb)
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Title Sample data
Downloaded 17 times
Description The age, sex, date of capture and location of capture is given for the stoat samples used in the study.
Download Sample data - age-sex-location.xlsx (64.39 Kb)
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When using this data, please cite the original publication:

Veale AJ, Edge KA, McMurtrie P, Fewster RM, Clout MN, Gleeson DM (2013) Using genetic techniques to quantify reinvasion, survival and in-situ breeding rates during control/eradication operations. Molecular Ecology 22(20): 5071-5083. http://dx.doi.org/10.1111/mec.12453

Additionally, please cite the Dryad data package:

Veale AJ, Edge K, McMurtrie P, Fewster RM, Clout MN, Gleeson DM (2013) Data from: Using genetic techniques to quantify reinvasion, survival and in-situ breeding rates during control/eradication operations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r634p
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