Data from: Modeling human population separation history using physically phased genomes

Song S, Sliwerska E, Emery S, Kidd JM

Date Published: November 16, 2016

DOI: http://dx.doi.org/10.5061/dryad.r7fs8

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Phased haplotpyes -- callable regions
Downloaded 5 times
Description The .tar archive contains phasing information for each sample. The files *.mask.bed.gz, indicate the genomic regions for each sample deemed to be callable. Files are based on the GRCh37 reference genome assembly. This release contains phased data generated by Song et al. as well as reprocessing of previously published data (samples NA20847 (KITZMAN et al. 2011), HGDP01029 and HGDP00456 (MEYER et al. 2012)). Please see Song et al. 2016 for more information. The following files are included: HG02799.fosmid.phased.vcf.gz, HG02799.mask.bed.gz, HG03108.fosmid.phased.vcf.gz, HG03108.mask.bed.gz, HG03428.fosmid.phased.vcf.gz, HG03428.mask.bed.gz, HGDP00456.fosmid.phased.vcf.gz, HGDP00456.mask.bed.gz, HGDP01029.fosmid.phased.vcf.gz, HGDP01029.mask.bed.gz, NA12878.fosmid.phased.vcf.gz, NA12878.mask.bed.gz, NA19240.fosmid.phased.vcf.gz, NA19240.mask.bed.gz, NA20847.fosmid.phased.vcf.gz, NA20847.mask.bed.gz, NA21302.fosmid.phased.vcf.gz, NA21302.mask.bed.gz.
Download callable-regions.tar (670.6 Mb)
Details View File Details
Title Fosmid Phased Haplotypes
Downloaded 5 times
Description The .tar archive contains phasing information for each sample. The files *.mask.bed.gz indicate the genomic regions for each sample deemed to be callable. Files are based on the GRCh37 reference genome assembly. This release contains phased data generated by Song et al. as well as reprocessing of previously published data (samples NA20847 (KITZMAN et al. 2011), HGDP01029 and HGDP00456 (MEYER et al. 2012)). Please see Song et al. 2016 for more information. The following files are included: HG02799.fosmid.phased.vcf.gz, HG02799.mask.bed.gz, HG03108.fosmid.phased.vcf.gz, HG03108.mask.bed.gz, HG03428.fosmid.phased.vcf.gz, HG03428.mask.bed.gz, HGDP00456.fosmid.phased.vcf.gz, HGDP00456.mask.bed.gz, HGDP01029.fosmid.phased.vcf.gz, HGDP01029.mask.bed.gz, NA12878.fosmid.phased.vcf.gz, NA12878.mask.bed.gz, NA19240.fosmid.phased.vcf.gz, NA19240.mask.bed.gz, NA20847.fosmid.phased.vcf.gz, NA20847.mask.bed.gz, NA21302.fosmid.phased.vcf.gz, NA21302.mask.bed.gz.
Download phased-haplotpyes.tar (933.4 Mb)
Details View File Details

When using this data, please cite the original publication:

Song S, Sliwerska E, Emery S, Kidd JM (2016) Modeling human population separation history using physically phased genomes. Genetics 205(1): 385-395. http://dx.doi.org/10.1534/genetics.116.192963

Additionally, please cite the Dryad data package:

Song S, Sliwerska E, Emery S, Kidd JM (2016) Data from: Modeling human population separation history using physically phased genomes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r7fs8
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: