Data from: Phylogenomic insights into the evolution of stinging wasps and the origins of ants and bees

Branstetter MG, Danforth BN, Pitts JP, Faircloth BC, Ward PS, Buffington ML, Gates MW, Kula RR, Brady SG

Date Published: April 3, 2017

DOI: http://dx.doi.org/10.5061/dryad.r8d4q

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Raw sequence reads.
Description Raw Illumina reads for all newly sequenced samples from this study.
Download ../bioproject/?term=PRJNA379583 (0 bytes)
Details View File Details
Title Alignment supermatrices.
Downloaded 106 times
Description All alignment supermatrices from this study. In NEXUS format. Includes UCE locus character set information.
Download all-alignment-supermatrices.zip (144.0 Mb)
Details View File Details
Title BEAST XML data files.
Downloaded 10 times
Description All BEAST XML data files generated for this study.
Download all-beast-xml-files.zip (2.036 Mb)
Details View File Details
Title Phylogenetic trees.
Downloaded 19 times
Description All phylogenetic trees generated in this study.
Download all-phylogenetic-trees-results.zip (341.8 Kb)
Details View File Details
Title Data tables.
Downloaded 8 times
Description All data tables from this study.
Download all-tables.xlsx (121.6 Kb)
Details View File Details
Title Partitioning files.
Downloaded 12 times
Description Partitioning files for the Hym-187T-F75 alignment supermatrix. Includes bylocus, hcluster, rcluster, and kmeans partitioning schemes. In RAxML format.
Download partition-files-for-hym-187t-f75-supermatrix.zip (559.3 Kb)
Details View File Details
Title Alternative topologies for SH-tests.
Downloaded 5 times
Description All alternative topologies used to test the position of ants and bees. SH-tests were performed using RAxML.
Download sh-test-alternative-topologies.zip (17.51 Kb)
Details View File Details
Title Supplemental figures S1 and S2 combined.
Downloaded 20 times
Description The supplemental figures combined into a single pdf figure.
Download supplemental-figure-complete.pdf (165.2 Kb)
Details View File Details
Title UCE contigs - aligned, untrimmed, and unfiltered.
Downloaded 8 times
Description Trinity contigs containing UCE loci. The contigs have been extracted from the bulk set of Trinity contigs using Phyluce and aligned, but they have not been trimmed to remove ambiguously aligned sites or filtered to remove loci with missing data.
Download uce-aligments-untrimmed-unfiltered.zip (98.38 Mb)
Details View File Details
Title UCE loci from genome-enabled samples.
Downloaded 6 times
Description UCE loci extracted from available genome-enabled Hymenoptera. Each UCE locus consists of a core region plus 400 bp of flanking DNA on either side. Includes a lastz match-counts database and fasta files for use with Phyluce.
Download uce-loci-extracted-from-genome-enabled-samples.zip (21.02 Mb)
Details View File Details
Title Trinity assemblies - bulk.
Downloaded 13 times
Description The bulk set of Trinity assemblies for all enriched samples analyzed in this study. Includes assemblies from the previous Faircloth et al. (2015) study. Cleaned reads were assembled using Trinity ver. r2013-02-25.
Download trinity-assemblies-all-samples.zip (730.4 Mb)
Details View File Details
Title BaCoCa results
Downloaded 7 times
Description BaCoCa analysis results. Performed on the Hym-187T-F75 locus set.
Download bacoca-results.xlsx (360.1 Kb)
Details View File Details

When using this data, please cite the original publication:

Branstetter MG, Danforth BN, Pitts JP, Faircloth BC, Ward PS, Buffington ML, Gates MW, Kula RR, Brady SG (2017) Phylogenomic Insights into the Evolution of Stinging Wasps and the Origins of Ants and Bees. Current Biology 27(7): 1019-1025. http://dx.doi.org/10.1016/j.cub.2017.03.027

Additionally, please cite the Dryad data package:

Branstetter MG, Danforth BN, Pitts JP, Faircloth BC, Ward PS, Buffington ML, Gates MW, Kula RR, Brady SG (2017) Data from: Phylogenomic insights into the evolution of stinging wasps and the origins of ants and bees. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r8d4q
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: