Data from: Novel conserved genotypes correspond to antibiotic resistance phenotypes of E. coli clinical isolates

Evangelista MA, Swick MC, Bodine TJ, Easton-Marks JR, Barth P, Shah MJ, Bormann Chung CA, Stanley S, McLaughlin SF, Lee CC, Sheth V, Doan Q, Hamill RJ, Steffen D, Becnel LB, Sucgang R, Zechiedrich L

Date Published: June 25, 2013

DOI: http://dx.doi.org/10.5061/dryad.r8q71

 

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Title Raw diBayes SNP calls for clinical isolate pools against three different reference E. coli genomes
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Description The attached zip file contains the raw DiBayes SNP calls for the paper Swick et al, PONE-D-12-36402R1. Novel Conserved Genotypes Correspond to Antibiotic Resistance Phenotypes of E. coli Clinical Isolates. PLOS ONE. It contains 16 folders, each of which follows this structure: $PoolID > $ReferenceGenome > DB > $PoolID > $PoolID_SNP.gff3. The $ReferenceGenome codes correspond to the following NCBI accession numbers: NC_010473 - DH10B, NC_010498 - SMS-3-5, NC_012967 - REL606
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When using this data, please cite the original publication:

Swick MC, Evangelista MA, Bodine TJ, Easton-Marks JR, Barth P, Shah MJ, Bormann Chung CA, Stanley S, McLaughlin SF, Lee CC, Sheth V, Doan Q, Hamill RJ, Steffen D, Becnel LB, Sucgang R, Zechiedrich L (2013) Novel conserved genotypes correspond to antibiotic resistance phenotypes of E. coli clinical isolates. PLoS ONE 8(6): e65961. http://dx.doi.org/10.1371/journal.pone.0065961

Additionally, please cite the Dryad data package:

Evangelista MA, Swick MC, Bodine TJ, Easton-Marks JR, Barth P, Shah MJ, Bormann Chung CA, Stanley S, McLaughlin SF, Lee CC, Sheth V, Doan Q, Hamill RJ, Steffen D, Becnel LB, Sucgang R, Zechiedrich L (2013) Data from: Novel conserved genotypes correspond to antibiotic resistance phenotypes of E. coli clinical isolates. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.r8q71
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