Data from: Restructuring higher taxonomy using broad-scale phylogenomics: the living Ophiuroidea

O'Hara TD, Hugall AF, Thuy B, Stöhr S, Martynov AV

Date Published: April 1, 2017

DOI: http://dx.doi.org/10.5061/dryad.rb334

 

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Title OphiuroidHC_TableS1
Downloaded 10 times
Description S1. Table of information on samples, exons and genes.
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Title OphiuroidHC_Table S2
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Description S2. Calibrations and fossil evidence used to date the molecular phylogeny.
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Title OphiuroidHC_576taxa_trees
Downloaded 7 times
Description Nexus format RAxML tree with bootstrap values, and PLRS version.
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Title OphiuroidHC_185taxa_RAxMLtrees
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Download OphiuroidHC_185taxa_RAxMLtrees.nex (334.8 Kb)
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Title OphiuroidHC_185taxa_BEASTtrees
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Download OphiuroidHC_185taxa_BEASTtrees.nex (2.294 Mb)
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Title OphiuroidHC_576taxa_1484exon
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Description Nexus format 416 gene, 1484 exon, 272,952 site, 576 taxa data-matrix.
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Title OphiuroidHC_S7_revised_classification
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Description Supplementary material S7, Revised classification of the recent Ophiuroidea.
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Title OphiuroidHC_FigS3
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Description S3. 576 taxa all-sites RAxML phylogeny with bootstrap (BS) support.
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Title OphiuroidHC_FigS4
Downloaded 11 times
Description S4. 185 taxa all-sites nucleotide RAxML with BS support.
Download OphiuroidHC_FigS4.pdf (659.0 Kb)
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Title OphiuroidHC_FigS5
Downloaded 15 times
Description S5. 185 taxa all-sites amino acid RAxML tree with BS support.
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Title OphiuroidHC_FigS6
Downloaded 18 times
Description S6. 185 taxa ASTRAL species tree, with local posterior probability support.
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Title OphiuroidHC_DRYAD_readme_file
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Description Word document with information on constituents of this Dryad package
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Title OphiuroidHC_distribution_summary
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Description Excel file of family latitude, longitude and depth distribution summary histogram values, with ggplot script, used to generate Figure 4.
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When using this data, please cite the original publication:

O'Hara TD, Hugall AF, Thuy B, Stöhr S, Martynov AV (2016) Restructuring higher taxonomy using broad-scale phylogenomics: the living Ophiuroidea. Molecular Phylogenetics and Evolution 107: 415-430. http://dx.doi.org/10.1016/j.ympev.2016.12.006

Additionally, please cite the Dryad data package:

O'Hara TD, Hugall AF, Thuy B, Stöhr S, Martynov AV (2016) Data from: Restructuring higher taxonomy using broad-scale phylogenomics: the living Ophiuroidea. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rb334
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