Data from: Integrating influenza antigenic dynamics with molecular evolution

Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A

Date Published: February 5, 2014

DOI: http://dx.doi.org/10.5061/dryad.rc515

 

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Title A/H1N1 HI data
Downloaded 81 times
Description Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal A/H1N1 influenza viruses and ferret antisera isolated between 1977 and 2009. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
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Title A/H3N2 HI data
Downloaded 142 times
Description Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal A/H3N2 influenza viruses and ferret antisera isolated between 1968 and 2011. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
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Title B/Victoria HI data
Downloaded 47 times
Description Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal B/Victoria influenza viruses and ferret antisera isolated between 1986 and 2011. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
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Title B/Yamagata HI data
Downloaded 40 times
Description Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal B/Yamagata influenza viruses and ferret antisera isolated between 1987 and 2011. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
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Title A/H1N1 sequence data
Downloaded 52 times
Description Tab-delimited text file giving sequence accession numbers for seasonal A/H1N1 influenza viruses isolated between 1977 and 2009. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
Download H1N1_seq_data.txt (5.959 Kb)
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Title A/H3N2 sequence data
Downloaded 96 times
Description Tab-delimited text file giving sequence accession numbers for seasonal A/H3N2 influenza viruses isolated between 1968 and 2011. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
Download H3N2_seq_data.txt (20.90 Kb)
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Title B/Victoria sequence data
Downloaded 39 times
Description Tab-delimited text file giving sequence accession numbers for seasonal B/Victoria influenza viruses isolated between 1986 and 2011. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
Download Vic_seq_data.txt (9.012 Kb)
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Title B/Yamagata sequence data
Downloaded 41 times
Description Tab-delimited text file giving sequence accession numbers for seasonal B/Yamagata influenza viruses isolated between 1987 and 2011. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
Download Yam_seq_data.txt (8.725 Kb)
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Title Incidence data
Downloaded 51 times
Description Incidence data for seasonal influenza viruses A/H3N2, A/H1N1, B/Vic and B/Yam. Each row represents a USA winter influenza season. The column "flu" gives the frequency of influenza positive isolates from all isolates tested. The columns "typeA" and "typeB" give the relative frequencies of influenza A and influenza B in samples that tested positive. The columns "subtypeH3", "subtypeH1", "subtypeH1pdm" give the relative frequencies of A/H3N2, A/H1N1 and pandemic A/H1N1 among type A samples. The columns "subtypeVic" and "subtypeYam" give the relative frequencies of B/Vic and B/Yam among type B samples. The column "ili" gives the influenza-like illness (ILI) frequency over the same season.
Download incidence_data.txt (501 bytes)
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When using this data, please cite the original publication:

Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A (2014) Integrating influenza antigenic dynamics with molecular evolution. eLife 3: e01914. http://dx.doi.org/10.7554/eLife.01914

Additionally, please cite the Dryad data package:

Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A (2014) Data from: Integrating influenza antigenic dynamics with molecular evolution. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rc515
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