Data from: Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta, and Cryptista

Burki F, Kaplan M, Tikhonekov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ

Date Published: February 5, 2016

DOI: http://dx.doi.org/10.5061/dryad.rj87v

 

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Title Transcriptome assembly of Amastigomonas sp
Downloaded 32 times
Description RNA-seq assembly of Amastigomonas sp. from Genbank SRA accession #SRR2170627. Read quality was assessed with FastQC before and after quality trimming and SMART adaptors removal, which was performed with FastqMcf. Cleaned reads were assembled into contigs with Trinity r20140717 using default parameters.
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Title Transcriptome assembly of Raineriophrys erinaceoides
Downloaded 25 times
Description RNA-seq assembly of Raineriophrys erinaceoides from Genbank SRA accession #SRR2170634. Read quality was assessed with FastQC before and after quality trimming and SMART adaptors removal, which was performed with FastqMcf. Cleaned reads were assembled into contigs with Trinity r20140717 using default parameters.
Download Raineriophrys_erinaceoides_transcriptome.fasta.zip (6.751 Mb)
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Title Transcriptome assembly of Choanocystis sp
Downloaded 22 times
Description RNA-seq assembly of Choanocystis sp. from Genbank SRA accession #SRR2170626. Read quality was assessed with FastQC before and after quality trimming and SMART adaptors removal, which was performed with FastqMcf. Cleaned reads were assembled into contigs with Trinity r20140717 using default parameters
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Title Transcriptome assembly of Acanthocystis sp
Downloaded 21 times
Description RNA-seq assembly of Acanthocystis sp. from Genbank SRA accession #SRR2170625. Read quality was assessed with FastQC before and after quality trimming and SMART adaptors removal, which was performed with FastqMcf. Cleaned reads were assembled into contigs with Trinity r20140717 using default parameters
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Title Transcriptome assembly of Raphidiophrys heterophryoidea
Downloaded 27 times
Description RNA-seq assembly of Raphidiophrys heterophryoidea from Genbank SRA accession #SRR2170621. Read quality was assessed with FastQC before and after quality trimming and SMART adaptors removal, which was performed with FastqMcf. Cleaned reads were assembled into contigs with Trinity r20140717 using default parameters
Download Raphidiophrys_heterophryoidea_transcripto...ta.zip (10.27 Mb)
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Title Trimmed alignment
Downloaded 36 times
Description Trimmed alignment of all 250 genes. BMGE was used for trimming, following MAFFT-LINSI for automatic alignment.
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Title Untrimmed sequences
Downloaded 39 times
Description Fasta files of all 250 genes containing untrimmed sequences.
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Title Single-gene phylogenetic trees
Downloaded 30 times
Description RAxML phylogenetic trees of all 250 genes.
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When using this data, please cite the original publication:

Burki F, Kaplan M, Tikhonekov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ (2016) Data from: Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta, and Cryptista. Proceedings of the Royal Society B 283(1823): 20152802. http://dx.doi.org/10.1098/rspb.2015.2802

Additionally, please cite the Dryad data package:

Burki F, Kaplan M, Tikhonekov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ (2016) Data from: Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta, and Cryptista. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rj87v
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