Data from: Sequence Capture using PCR-generated Probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms

Peñalba JV, Smith LL, Tonione MA, Sass C, Hykin SM, Skipwith PL, McGuire JA, Bowie RCK, Moritz C

Date Published: March 20, 2014

DOI: http://dx.doi.org/10.5061/dryad.rk204

 

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Title Passerines_CleanReads
Description Contains the cleaned reads for the Passerine samples.
Download Passerines_Cleanreads.zip (239.8 Mb)
Download README.txt (506 bytes)
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Title Draco_CleanReads
Description Contains the cleaned reads for the Draco samples.
Download Draco_CleanReads.zip (116.1 Mb)
Download README.txt (497 bytes)
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Title Enyalius_CleanReads
Description Contains cleaned reads for the Enyalius samples.
Download Enyalius_CleanReads.zip (3.760 Gb)
Download README.txt (503 bytes)
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Title AbyssAssemblies
Downloaded 1 time
Description Contains the ABySS assembly output for each library. Each file has the following naming convention: LIBRARY_KMER_KMERCOV-contigs.fa
Download AbyssAssemblies.zip (102.3 Mb)
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Title FinalAssemblies
Downloaded 1 time
Description Contains final assemblies for each sample. These are the outputs of pooling the ABySS assemblies for each sample and performing a local clustering and long-read assembly.
Download FinalAssemblies.zip (3.815 Mb)
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Title References
Description Contains the references recovered for each locus for each sample.
Download References.zip (717.8 Kb)
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Title Passerines_Alignments
Description Contains alignments for the Passerine samples.
Download Passerine_Alignments.zip (120.6 Mb)
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Title Draco_Alignments
Description Contains alignments for the Draco samples.
Download Draco_Alignments.zip (15.87 Mb)
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Title Enyalius_Alignments
Description Contains the alignments for the Enyalius samples.
Download Enyalius_Alignments.zip (1.943 Gb)
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Title Haplotypes
Description Contains haplotypes for the heterozygous loci for all the samples. The homozygous loci and the haploid mitochondrial genes can be recovered from the references.
Download Haplotypes.zip (1.089 Mb)
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When using this data, please cite the original publication:

Peñalba JV, Smith LL, Tonione MA, Sass C, Hykin SM, Skipwith PL, McGuire JA, Bowie RCK, Moritz C (2014) Sequence Capture using PCR-generated Probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms. Molecular Ecology Resources 14(5): 1000-1010. http://dx.doi.org/10.1111/1755-0998.12249

Additionally, please cite the Dryad data package:

Peñalba JV, Smith LL, Tonione MA, Sass C, Hykin SM, Skipwith PL, McGuire JA, Bowie RCK, Moritz C (2014) Data from: Sequence Capture using PCR-generated Probes (SCPP): a cost-effective method of targeted high-throughput sequencing for non-model organisms. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rk204
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