Data from: A genomic footprint of hybrid zone movement in crested newts

Wielstra B, Burke T, Butlin RK, Avcı A, Üzüm N, Bozkurt E, Olgun K, Arntzen JW

Date Published: April 10, 2017

DOI: http://dx.doi.org/10.5061/dryad.rk491

 

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Title Ion_Torrent_raw_outputA
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Description Raw Ion Torrent sequencing reads, part 1.
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Title Ion_Torrent_raw_outputB
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Description Raw Ion Torrent sequencing reads, part 2.
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Title Ion_Torrent_raw_outputC
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Description Raw Ion Torrent sequencing reads, part 3.
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Title Ion_Torrent_raw_outputD
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Description Raw Ion Torrent sequencing reads, part 4.
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Title Ion_Torrent_filtered_outputA
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Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 1.
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Title Ion_Torrent_filtered_outputB
Downloaded 5 times
Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 2.
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Title Ion_Torrent_filtered_outputC
Downloaded 4 times
Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 3.
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Title Ion_Torrent_filtered_outputD
Downloaded 3 times
Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 4.
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Title Ion_Torrent_filtered_outputE
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Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 5.
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Title Ion_Torrent_filtered_outputF
Downloaded 4 times
Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 6.
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Title Ion_Torrent_filtered_outputG
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Description Sequencing reads after filtering and BWA alignments in SAM format and raw SNP reports in VCF and BCF format, part 7.
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Title Ion_Torrent_processed_output_alignments_scripts
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Description Scripts used to process Ion Torrent data, the filtered SNP report used to construct consensus sequences, an overview of the number of reads in total and per marker and/or individual, nuclear DNA sequence alignments and nuclear DNA data in genotypic format.
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Title input_output_StructureA
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Description Files associated with the Structure analysis, part 1
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Title input_output_StructureB
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Description Files associated with the Structure analysis, part 2
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Title input_output_StructureC
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Description Files associated with the Structure analysis, part 3
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Title Input_output_other_analyses
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Description Files associated with the remaining analyses.
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When using this data, please cite the original publication:

Wielstra B, Burke T, Butlin RK, Avcı A, Üzüm N, Bozkurt E, Olgun K, Arntzen JW (2017) A genomic footprint of hybrid zone movement in crested newts. Evolution Letters 1(2): 93-101. http://dx.doi.org/10.1002/evl3.9

Additionally, please cite the Dryad data package:

Wielstra B, Burke T, Butlin RK, Avcı A, Üzüm N, Bozkurt E, Olgun K, Arntzen JW (2017) Data from: A genomic footprint of hybrid zone movement in crested newts. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rk491
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