Data from: Comparative transcriptomics support evolutionary convergence of diapause responses across Insecta

Ragland GJ, Keep E

Date Published: April 25, 2017

DOI: http://dx.doi.org/10.5061/dryad.rq3sp

 

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Title Species_Orthologs.tar.gz
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Description Archive containing files for target species-to-Drosophila melanogaster pairwise ortholog models. Each file maps ids from a transcriptome assembly to D. melanogaster flyabase IDs. Methods for orthology assignment and references for each transcriptome assembly available in Ragland and Keep, and in the 'MetaData' data file also contained in this archive.
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Title MetaDataDryad
Downloaded 9 times
Description Meta data for transcriptomic data sets used in the comparative analysis to generate gene expression matrix 'UnFilteredExpressionAllOrthos' also included in this archive.
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Title UnFilteredExpressionAllOrthos.txt.gz
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Description Matrix of diapause expression data across included insect species. Each row of expression data is associated with a single gene orthologous across all species, designated with the flyabase id for the gene in Drosophila melanogaster. Each data value is a log2 fold change: log2(diapause) - log2(non-diapause) for each included species. See Ragland and Keep for methods. Species codes are described in the first metadata line of the file.
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When using this data, please cite the original publication:

Ragland GJ, Keep E (2017) Comparative transcriptomics support evolutionary convergence of diapause responses across Insecta. Physiological Entomology, online in advance of print. http://dx.doi.org/10.1111/phen.12193

Additionally, please cite the Dryad data package:

Ragland GJ, Keep E (2017) Data from: Comparative transcriptomics support evolutionary convergence of diapause responses across Insecta. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rq3sp
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