Data from: Using biogeographic history to inform conservation: the case of Preble’s meadow jumping mouse

Malaney JL, Cook JA

Date Published: July 26, 2013

DOI: http://dx.doi.org/10.5061/dryad.rq412

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title ApoB alignment
Downloaded 10 times
Description Ninety-two samples of sequence data from the ApoB gene across jumping mice including N. insignis (5 subspecies), Z. hudsonius (12 subspecies), Z. princeps (10 subspecies), and Z. trinotatus (4 subspecies).
Download ApoB.fas (35.93 Kb)
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Title BRCA alignment
Downloaded 7 times
Description Ninety-two samples of sequence data from the BRCA gene across jumping mice including N. insignis (5 subspecies), Z. hudsonius (12 subspecies), Z. princeps (10 subspecies), and Z. trinotatus (4 subspecies).
Download BRCA.fas (74.75 Kb)
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Title GBA alignment
Downloaded 12 times
Description Ninety-two samples of sequence data from the GBA gene across jumping mice including N. insignis (5 subspecies), Z. hudsonius (12 subspecies), Z. princeps (10 subspecies), and Z. trinotatus (4 subspecies).
Download GBA.fas (33.99 Kb)
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Title MYH6 alignment
Downloaded 7 times
Description Ninety-two samples of sequence data from the MYH6 gene across jumping mice including N. insignis (5 subspecies), Z. hudsonius (12 subspecies), Z. princeps (10 subspecies), and Z. trinotatus (4 subspecies).
Download MYH6.fas (26.73 Kb)
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Title SDM_records
Downloaded 16 times
Description High-quality, natural history museum-based samples obtained from MANIS (Jan-2011) and down-sampled (aka thinned) to 10km radius to offset sampling bias. Taxa are lineage-based assignments for each species used in niche modeling.
Download SDM_records.xlsx (43.53 Kb)
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Title Cytb alignment by group (sets)
Downloaded 27 times
Description Nexus file of 762 samples of DNA sequence data for the cytochrome b gene across jumping mice including N. insignis (5 subspecies), Z. hudsonius (12 subspecies), Z. princeps (10 subspecies), and Z. trinotatus (4 subspecies). Also includes a taxon set conforming to the 21 jumping mice lineages and 4 species.
Download Cytb_bygroup.nex (897.8 Kb)
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When using this data, please cite the original publication:

Malaney JL, Cook JA (2013) Using biogeographic history to inform conservation: the case of Preble’s meadow jumping mouse. Molecular Ecology 22(24): 6000–6017. http://dx.doi.org/10.1111/mec.12476

Additionally, please cite the Dryad data package:

Malaney JL, Cook JA (2013) Data from: Using biogeographic history to inform conservation: the case of Preble’s meadow jumping mouse. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rq412
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