Data from: Across population genomic prediction scenarios in which Bayesian variable selection outperforms GBLUP

van den Berg S, Calus MPL, Meuwissen THE, Wientjes YCJ

Date Published: December 31, 2015

DOI: http://dx.doi.org/10.5061/dryad.rq80k

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Genotypes_26503SNPs
Downloaded 33 times
Description File with ID and genotypes for 26503 SNPs for 1285 animals (from three breeds).
Download Genotypes_26503SNPs.txt (34.06 Mb)
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Title ID_Breed
Downloaded 17 times
Description File with the breeds for each of the 1285 animals. File contains: ID, breedcode (HF=Holstein Friesian, GWH=Groningen White Headed or MRY=Meuse-Rhine-Yssel).
Download ID_Breed.txt (10.71 Kb)
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Title Phenotypes_GenCor_1
Downloaded 20 times
Description Files with the simulated phenotypes (100 replicates) for the scenario using a genetic correlation of 1 between the breeds. Each of the files contains: ID, Phenotype with 3000 QTL, Phenotype with 300 QTL, Phenotype with 30 QTL, Phenotype with 3 QTL.
Download Phenotypes_GenCor_1.7z (2.823 Mb)
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Title Phenotypes_GenCor_0.8
Downloaded 11 times
Description Files with the simulated phenotypes (100 replicates) for the scenario using a genetic correlation of 0.8 between the breeds. Each of the files contains: ID, Phenotype with 3000 QTL, Phenotype with 300 QTL, Phenotype with 30 QTL, Phenotype with 3 QTL.
Download Phenotypes_GenCor_0.8.7z (2.826 Mb)
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Title Phenotypes_GenCor_0.4
Downloaded 17 times
Description Files with the simulated phenotypes (100 replicates) for the scenario using a genetic correlation of 0.4 between the breeds. Each of the files contains: ID, Phenotype with 3000 QTL, Phenotype with 300 QTL, Phenotype with 30 QTL, Phenotype with 3 QTL.
Download Phenotypes_GenCor_0.4.7z (2.831 Mb)
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When using this data, please cite the original publication:

van den Berg S, Calus MPL, Meuwissen THE, Wientjes YCJ (2015) Across population genomic prediction scenarios in which Bayesian variable selection outperforms GBLUP. BMC Genetics 16(1): 146. http://dx.doi.org/ 10.1186/s12863-015-0305-x

Additionally, please cite the Dryad data package:

van den Berg S, Calus MPL, Meuwissen THE, Wientjes YCJ (2015) Data from: Across population genomic prediction scenarios in which Bayesian variable selection outperforms GBLUP. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rq80k
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