Data from: The population genomics of sunflowers and genomic determinants of protein evolution revealed by RNAseq

Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH

Date Published: October 29, 2012

DOI: http://dx.doi.org/10.5061/dryad.rs4k0

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title reference transcriptome
Downloaded 71 times
Description fasta file containing reference transcriptome (16312 contigs) described in the method section.
Download TranscriptomeRef_mar30.fa (17.90 Mb)
Details View File Details
Title snp_table
Downloaded 93 times
Description Table containing genotypes for all 433,257 SNPs. First column contains contig name were the SNP is found, second column the reference allele, third column the position of the SNP within the contig, last three columns Fst values for the three comparisons (annuus-debilis, annuus-petiolaris, debilis-petiolaris). Species identification of individuals can be found in table 4. File was compressed (.zip).
Download snp_table.zip (9.645 Mb)
Details View File Details
Title raw read count per gene
Downloaded 41 times
Description Number of reads aligned, per contig, per individuals. Column one contains contig name, column two length of the contig.
Download raw_read_counts (2.363 Mb)
Details View File Details

When using this data, please cite the original publication:

Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH (2012) The population genomics of sunflowers and genomic determinants of protein evolution revealed by RNAseq. Biology 1(3): 575-596. http://dx.doi.org/10.3390/biology1030575

Additionally, please cite the Dryad data package:

Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH (2012) Data from: The population genomics of sunflowers and genomic determinants of protein evolution revealed by RNAseq. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rs4k0
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: