Data from: Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

 

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Title genepop_western_alaska_chinook_RAD
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Description Genepop formatted file containing genotypes from the 10,944 SNPs and 265 individuals used in this study. SNP names are radtag_snp position i.e. a SNP named 12_46 would be on radtag number 12 and the SNP would be at position 46 in the tag. Population abbreviations are collection year _ individual. For example Koktuli10_0002 would be from the Koktuli River, collected in 2010, and would be individual 2.
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Title sequences_for_10944_SNPs
Downloaded 57 times
Description Fasta file containing the sequences for each allele for each SNP discovered in this study. Sequences are designated by rad tag_allele_SNP position(s). Tags may contain multiple SNPs, for example >84_AT_40-84 would designate the sequence for rad tag 84 which has SNPs at positions 40 and 84. Since we only used one SNP per tag for the study, not all SNPs in this file are found in the genotypes file. To obtain the positions of the SNPs that we did use, please see the locus names in the genepop file.
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When using this data, please cite the original publication:

Larson WA, Seeb LW, Everett MV, Waples RK, Templin WD, Seeb JE (2014) Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications 7(3): 355–369. http://dx.doi.org/10.1111/eva.12128

Additionally, please cite the Dryad data package:

Larson WA, Seeb LW, Everett MV, Waples RK, Templin WD, Seeb JE (2014) Data from: Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rs4v1
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