Data from: Signals of selection in conditionally expressed genes in the diversification of three horned beetles species

Pespeni MH, Ladner JT, Moczek AP

Date Published: March 24, 2017

DOI: https://doi.org/10.5061/dryad.rv08j

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Title Fasta files of original transcriptome assemblies for the three species
Downloaded 3 times
Description These are the original transcriptome assembly files prior to the filtering and ORF prediction described in the paper.
Download original_assemblies.tar.gz (46.64 Mb)
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Title Functional Annotation Table
Downloaded 6 times
Description Gene annotation of the 2010 orthologous genes for each species. The table includes best blast hit to NCBI nr database, Gene Ontology (GO) categories, and pfam domains.
Download AnnotationTable.txt (1.707 Mb)
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Title Fasta file of the 2010 orthologs for each of the three species
Downloaded 3 times
Description Ortholog identification and alignment are described in the paper. Briefly, clusters of orthologous genes (with a single member from each species) were identified using blast and mcl clustering. Alignments were made using MUSCLE.
Download Ortholog2010setSequences.fa (4.774 Mb)
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Title Pairwise dN, dS, dN/dS data for the 2010 orthologs
Downloaded 9 times
Description Pairwise dN, dS, and dN/dS were calculated for each ortholog using PAML. See paper and the scripts and commands for additional details.
Download dN.dS_data.txt (344.6 Kb)
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Title Scripts and commands for the generation of the PAML results
Download scripts_and_commands.tar.gz (4.205 Kb)
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When using this data, please cite the original publication:

Pespeni MH, Ladner JT, Moczek AP (2017) Signals of selection in conditionally expressed genes in the diversification of three horned beetle species. Journal of Evolutionary Biology 30(9): 1644-1657. https://doi.org/10.1111/jeb.13079

Additionally, please cite the Dryad data package:

Pespeni MH, Ladner JT, Moczek AP (2017) Data from: Signals of selection in conditionally expressed genes in the diversification of three horned beetles species. Dryad Digital Repository. https://doi.org/10.5061/dryad.rv08j
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