Data from: Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera

 

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Title Carpinteria Microsatellite Data
Downloaded 17 times
Description Microsatellite data in 6-digit format, with individual ID, X and Y coordinates, and ten microsatellite markers. Missing data indicated by 000000.
Download Carp021612CNoMpy9.txt (13.72 Kb)
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Title Goleta Microsatellite Data
Downloaded 10 times
Description Microsatellite data in 6-digit format, with individual ID, X and Y coordinates, and ten microsatellite markers. Missing data indicated by 000000.
Download Gol021612CNoMpy9MDDrop.txt (13.42 Kb)
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Title Mohawk Microsatellite Data
Downloaded 6 times
Description Microsatellite data in 6-digit format, with individual ID, X and Y coordinates, and ten microsatellite markers. Missing data indicated by 000000.
Download Moh021612CNoMpy9.txt (15.25 Kb)
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Title R script to calculate summary statistics from microsatellite data
Downloaded 34 times
Description Script calculates mean number of alleles per locus, observed heterozygosity, expected heterozygosity, and Fis. Input files are microsatellite data only, with alleles separated into separate columns (i.e. 10 loci are presented in 20 columns, with no headers or other columns).
Download Summary Stats.R (2.68 Kb)
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Title R script to simulate one generation of inbreeding
Downloaded 11 times
Description Script simulates selfing, and creation of full-sibling, half-sibling, and first cousins in proportions ranging from 0 to 100%. Input files are microsatellite data only, with alleles separated into separate columns (i.e. 10 loci are presented in 20 columns, with no headers or other columns).
Download All Crosses 082412.R (34.31 Kb)
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When using this data, please cite the original publication:

Johansson ML, Raimondi PT, Reed DC, Coelho NC, Serrão EA, Alberto FA (2013) Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera. Molecular Ecology 22(19): 4842–4854. http://dx.doi.org/10.1111/mec.12444

Additionally, please cite the Dryad data package:

Johansson ML, Raimondi PT, Reed DC, Coelho NC, Serrão EA, Alberto FA (2013) Data from: Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.s1b07
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